STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95180.1Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Conserved hypothetical protein. (247 aa)    
Predicted Functional Partners:
CAZ95181.1
Hypothetical protein. Putatively localized in the cytoplasm.
 
     0.884
CAZ95179.1
Beta-helix fold protein; Hypothetical protein predicted to adopts a right handed parallel beta-helix fold; Contains a signal peptide cleaved between the residues 17 and 18; Localized in the periplasmic space; Hypothetical protein.
       0.773
CAZ95182.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Conserved hypothetical protein.
   
   0.542
CAZ95146.1
The sensor histidine kinase belongs to two-component signal transduction systems. It catalyzes the ATP dependent autophosphorylation of a conserved histidine in its phosphoacceptor domain and the signal dependent phosphorylation of a conserved aspartic acid present in the response regulator receiver domain; Contains two transmembrane segments and two N-terminal PAS/PAC domains involved in many signalling proteins where they are used as a signal sensor domain; Localized in the cytoplasmic membrane; Family membership.
  
     0.526
CAZ98419.1
Hypothetical Co-chaperone that could be part of a chaperone (protein folding) system; Contains a N-terminal 'J' domain; Belongs to the J-protein family, type 3 subgroup; Localized in the cytoplasm; Function unclear.
  
 
   0.453
CAZ97472.1
Protein that shares one central PKD module (146-230). The presence of this domain would suggest that the protein possess an extracellular segment; Probably the PKD module functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 19 and 20; Localized in the outer membrane; Family membership.
  
     0.418
gepA
The Genetic Element Protein A is part of a Bacteriophage or a conjugative transposon. Its exact function is unknown; Localized in the cytoplasm; Function unclear.
  
     0.414
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.