STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
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[Homology]
Score
CAZ94188.1Bacterial surface antigen; Conserved protein belonging to the bacterial surface antigen family, which includes D15 antigen from H. influenzae, OMA87 from P.multocida, OMP85 from N. meningitidis and N.gonorrhoeae. Features a signal peptide cleaved between the residues 22 and 23. Predicted to be Localized in the outer membrane; Function unclear. (366 aa)    
Predicted Functional Partners:
CAZ97035.1
Conserved hypothetical protein; Contains a B_ant_repeat domain (DUF 11) in the N-terminal region; Shows 56% of identity with the N-terminal domain of ORF 609; Signal peptide cleaved between the residues 26 and 27; Putatively localized in the outer membrane (PSORT result).
  
     0.653
ecfE
Peptidase EcfE, family M50; Peptidase EcfE degrades both heat shock sigma factors RpoE and RpoH in vitro. Features a N-terminal catalytic module belonging to the family 50 of the metallopeptidases followed by a PDZ module. Family M50 peptidases contain an HEXXH motif; the glutamate has a catalytic role and the two histidines are ligands of a zinc ion. There is a more C-terminal Asp (in an invariant Asp-Gly motif) that is required for activity and is predicted to be a third ligand. Features four transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function an [...]
 
  
 0.621
CAZ98264.1
Kelch repeats protein; This conserved protein displays a N-terminal fibronectin type III domain followed by five Kelch repeats. The kelch motif forms a beta sheet and several of these sheets associate to form a beta propeller structure; Prokaryotic lipoprotein signal peptide cleaved between the residues 18 and 19; Localized in the outer membrane; Conserved hypothetical protein.
 
 
 0.569
CAZ98804.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (27-99) and the Plug module (115-218) acting as a channel gate; The signal peptide is cleaved between the residues 25 and 26; Family membership.
  
     0.540
CAZ97029.1
Conserved hypothetical protein; Contains a domain of unknown function (DUF 11) and a fragment of 34 residues of Actin-binding like protein (Filamin/ABP280); Signal peptide cleaved betwenn the residues 20 and 21; Putatively localized in the outer membrane.
  
     0.521
CAZ97550.1
Protein containing six Kelch repeats. The kelch motif forms a beta sheet and several of these sheets associate to form a beta propeller structure; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 23 and 24; Localized in the outer membrane; Family membership.
 
 
 0.518
CAZ95002.1
This conserved protein displays Kelch repeats. The kelch motif forms a beta sheet and several of these sheets associate to form a beta propeller structure, as demonstrated for galactose oxidase. Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 19 and 20; Localized in the cytoplasmic membrane; Function unclear.
 
 
 0.490
tsfA
Elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.489
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
    0.480
CAZ97042.1
Conserved hypothetical protein; Contains several Single hybrid motifs found in biotinyl/lipoyl-carrier proteins and domains, where the biotin and lipoic acid moieties act as covalently attached coenzyme in various enzymes; Signal peptide cleaved between the residues 23 and 24; Putatively localized in the cytoplasmic membrane.
  
     0.454
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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