STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94194.1The AsnC/Lrp-type transcriptional regulator family appears to be an important regulatory system of the amino acid metabolism and related processes; Contains a N-terminal DNA binding AsnC/Lrp-type HTH domain. The C-terminal part contains an effector-binding domain and/or an oligomerization domain; Localized in the cytoplasm; Family membership. (153 aa)    
Predicted Functional Partners:
asnC3
The transcriptional regulator AsnC is the activator of the asnA gene involved in the asparagine synthesis and is a autogenous regulator of its own transcription; Contains a N-terminal AsnC/Lrp-type HTH domain; Localized in the cytoplasm; High confidence in function and specificity.
  
     0.771
CAZ96644.1
ATPase, AAA family; Protein possibly involved in the DNA replication or DNA repair; Contains a N-terminal AAA ATPase domain that, in general, acts as ATP-dependent protein clamps; Belongs to the AAA ATPase family that performs chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes; Localized in the cytoplasm; Specificity unclear.
      0.579
metE
5-Methyltetrahydropteroyltriglutamate- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
     
 0.559
ftsK
FtsK is a DNA motor protein, which is both required to move DNA out of the region of the septum during cell division and for the septum formation. Tracks DNA in an ATP-dependent manner by generating positive supercoils in front of it and negative supercoils behind it. It forms a hexamer. Features four transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
    
 0.506
CAZ94193.1
The sensor histidine kinase belongs to two-component signal transduction systems. It catalyzes the ATP dependent autophosphorylation of a conserved histidine in its phosphoacceptor domain and the signal dependent phosphorylation of a conserved aspartic acid present in the response regulator receiver domain; Contains four and two transmembrane segments in the N- and C- terminal domain respectively; Localized in the cytoplasmic membrane; Family membership.
       0.497
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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