STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
bgaDBeta-galactosidase, family GH2; Enzyme belonging to the family 2 of glycoside hydrolases (GH2) which catalyzes the hydrolysis of the beta-1,4 linkage at the terminal non-reducing of beta-D-galactosides, releasing a beta-D-galactose residue; Signal peptide cleaved between residues 22 and 23; Localized in the periplasmic space; High confidence in function and specificity. (948 aa)    
Predicted Functional Partners:
CAZ94263.1
This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp104 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029). Features a signal peptide cleaved between residues 20 and 21. Localized in the periplasm; Specificity unclear.
 
     0.590
CAZ96463.1
Conserved hypothetical protein; Shows a weak similarity with the glycoside hydrolases of the family 42 (GH42); Seems to be a lipoprotein with a signal peptide cleaved between residues 15 and 16; Putatively localised in the outer membrane.
 
 0.568
lacZ
Beta-galactosidase, family GH2; Enzyme that catalyzes the hydrolysis of the beta- 1, 4 linkage at the terminal non-reducing of beta-D-galactosides, releasing a beta-D-galactose residue; Belongs to the family 2 of glycoside hydrolases (GH2); Signal peptide cleaved between residues 28 and 29; Possibly localized in the outer membrane; High confidence in function and specificity.
  
  
 
0.541
CAZ97767.1
Sulfatase, family S1-30; The family 1 of sulfatases is composed of enzymes that require the posttranslational oxidation of a conserved cysteine (or serine) to a catalytic formylglycine to hydrolyze various sulfate ester substrates; Belongs to the family 1 of sulfatases (S1: formylglycine-dependent sulfatases), subfamily 30; Signal peptide cleaved between the residues 24 and 25; Localized in the periplasmic space; Family membership.
  
   0.540
rhaT1
L-rhamnose/proton symporter is involved in the uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell. Can also transport L-mannose and L-xylose, but at reduced rates. Contains ten transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity.
  
   
 0.512
pfkB
6-Phosphofructokinase, isozyme 2; 6-Phosphofructokinase catalyzes the thirth step of glycolysis (Embden-Meyerhof pathway). It phosphoryles the D-fructose 6-phosphate to D-fructose 1,6-bisphosphate. It is an allosteric homodimer enzyme. Because the reaction catalyzed by Phosphofructokinase is energetically very favorable, it is essentially irreversible; Belongs to the carbohydrate kinase PfkB family; Localized in the cytoplasm; High confidence in function and specificity.
   
    0.511
CAZ97480.1
Conserved hypothetical protein; Contains a central transmembrane helix; Localized in the cytoplasmic membrane.
  
     0.509
CAZ97289.1
Conserved hypothetical membrane protein; Protein containing a domain of unknown function DUF1680 predicted to be a possible new family of glycoside hydrolases of unknown specificity; Putative lipoprotein signal peptide cleaved between the residues 16 and 17; Possibly localized in the outer membrane; Family membership.
 
     0.491
CAZ97287.1
Conserved protein belonging to the DUF1680 family protein; Localized in the cytoplasm.
 
     0.489
CAZ95310.1
Conserved hypothetical membrane protein; Contains a central transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
       0.485
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.