STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase, also known as Penicillin-binding protein 4, is involved in the peptidoglycan biosynthesis. It hydrolyzes the D-Ala-D-Ala bond in the cross-linking peptide precursor, and performs the transpeptidation reaction between the D-Ala and the meso-2,6-diaminopimelate of adjacent crosslinking peptides of the bacterial cell wall; Belongs to the family S13 of the serine peptidases; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 27 and 28; Localized in the outer membrane; High confidence in function and specificity. (430 aa)    
Predicted Functional Partners:
CAZ95907.1
Serine peptidase belonging to the family S12, which includes D-Ala-D-Ala carboxypeptidase B and aminopeptidase DmpB. The active site residues Ser and Lys form the catalytic dyad and are found in the motif Ser-Xaa- Thr-Lys. Localized in the cytoplasm; Specificity unclear.
    
 0.905
CAZ98306.1
Amidase catalyzes the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3. The specificity of this enzyme is unknown. Belongs to a protein family including N-acetylmuramoyl-L-alanine amidase. Features an uncleaved signal peptide. Localized in the cytoplasmic membrane; Specificity unclear.
 
   
 0.663
CAZ94219.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 17 and 18; Probably localized in the outer membrane; Family membership.
  
     0.633
CAZ94220.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (20-93) and the Plug module (110-246) acting as a channel gate; The signal peptide is cleaved between the residues 19 and 20; Family membership.
  
     0.544
CAZ94217.1
L-alanine-DL-glutamate epimerase catalyzes the epimerization of D-Glu into L-Glu, in the context of the dipeptide L-Ala-D-Glu, which is a component of peptidoglycan. Involved in peptidoglycan metabolism. This enzyme belongs to the Mandelate racemase / muconate lactonizing enzyme family. These enzymes feature a N-terminal domain with a Enolase N-terminal domain-like fold and a C-terminal TIM alpha/beta barrel fold. Localized in the cytoplasm; High confidence in function and specificity.
 
     0.538
CAZ94205.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.537
CAZ97886.1
This conserved protein belongs to the OmpA-like family. OmpA-like domains are thought to be responsible for non-covalent interactions with peptidoglycan; Signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space and/or in the outer membrane; Family membership.
  
     0.486
CAZ98307.1
Peptidase family M14 contains mainly metallocarboxypeptidases. The single catalytic zinc ion is tetrahedrally coordinated by two histidines and a glutamate, as well as a water molecule. One of the histidines and the glutamate occur in the motif His-Xaa-Xaa-Glu. Features a signal peptide cleaved between the residues 18 and 19. Localized in the periplasm; Specificity unclear.
  
     0.470
CAZ95746.1
Dipeptidyl peptidase, family C40; Dipeptidyl peptidase hydrolyzes gamma-D-Glu-L-(meso)A2pm linkages only in those peptide units that have a free N-terminal L-alanine. It is involved in peptidoglycan metabolism; Belongs to the family C40 of peptidases; Prokaryotic lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the outer membrane; High confidence in function and specificity.
 
  
 0.409
CAZ94596.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.406
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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