STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95388.1The flavoredoxins are a group of proteins with a tightly bound flavin mononucleotide (FMN) that mediate electron transfer at low redox potential producing reduced flavin for various biological processes; Some flavin reductases function in a two-component enzyme system; Contains a FMN-binding split barrel; Specificity unclear. (294 aa)    
Predicted Functional Partners:
CAZ95389.1
The sensor histidine kinase belongs to two-component signal transduction systems. It catalyzes the ATP dependent autophosphorylation of a conserved histidine in its phosphoacceptor domain and the signal dependent phosphorylation of a conserved aspartic acid present in the response regulator receiver domain; Contains two transmembrane segments; Localized in the cytoplasmic membrane; Family membership.
 
    0.651
hmgA
Catalytic activity: Homogentisate + O2 = 4-maleylacetoacetate. Tyrosine metabolism and Styrene degradation; High confidence in function and specificity.
 
   
 0.619
CAZ95387.1
Conserved hypothetical membrane protein; Contains a signal peptide cleaved between the residues 20 and 21; Could be localized in the outer membrane; Conserved hypothetical protein.
       0.545
CAZ95386.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.525
CAZ95697.1
Flavoprotein, bacterial luciferase family; This protein is higly; Family membership.
  
  
 0.509
ribAB
Riboflavin biosynthesis protein RibAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.468
paaE
Phenylacetic acid degradation NADH oxidoreductase; The protein PaaE is involved in the phenylacetic acid aerobic catabolism. It is likely part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation. It is activated by cAMP receptor protein (CRP) and the integration host factor (IHF). Contains a N-terminal FAD-binding domain, a central feredoxin-like NAD-binding domain and a C-terminal 2Fe-2S iron-sulfur cluster binding domain; Localized in the cytoplasm; High confidence in function and specificity.
 
  
 0.448
aatA
Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
 
     0.443
CAZ95390.1
Hypothetical membrane protein; Contains a C-terminal transmembrane segment; Probably localized in the cytoplasmic membrane; Hypothetical protein.
       0.440
udpA
Uridine phosphorylase catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis; Forms a homohexamer; Localized in the cytoplasm; High confidence in function and specificity.
  
     0.410
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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