STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rngARibonuclease G is involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure; Contains a S1 motif domain; Belongs to the RNase E/G family, RNase G subfamily; Localized in the cytoplasm; High confidence in function and specificity. (515 aa)    
Predicted Functional Partners:
pnpA
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.937
enoA
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
 
 0.883
recX
RecX-type transcriptional regulator; Modulates RecA activity; Belongs to the RecX family.
 
     0.620
CAZ95923.1
Mechanosensitive channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation; Contains four transmembrane helices; Belongs to the small- conductance MS channels; Localized in the cytoplasmic membrane; Specificity unclear.
 
      0.572
hupA
Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. It forms a heterodimer of an alpha and a beta chain; Belongs to the bacterial histone-like protein family; localized in the cytoplasm; High confidence in function and specificity.
  
  
 0.568
cca
Multifunctional CCA protein; CcA catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows highest phosphatase activity in the presence of Ni(2+) and hydrolyzes pyrophosphate, canonical 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi. Displays a metal-independent phosphodiesterase activity toward 2',3'-cAMP, 2',3'-cGMP, and 2' [...]
 
 
 
 0.542
lepB
Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity.
 
    0.530
murF2
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase, catalytic domain; UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF) is an enzyme involved in the final step of the biosynthesis of peptidoglycan which catalyzes the addition of D-alanyl-D-alanine to the nucleotide precursor UDP-N- acetylmuramoyl-L-alanyl-D-glutamyl-meso-2, 6-diaminoheptanedioate; Belongs to the MurCDEF family; This sequence is the N-terminal catalytic domain of MurF only; Localized in the cytoplasm; High confidence in function and specificity.
  
    0.509
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
 
  
 0.508
phoH
PhoH is induced by phosphate starvation. It has an ATP-binding activity in vitro and is predicted to be a ATPase. Localized in the cytoplasm; Function unclear.
 
    0.501
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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