STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94219.1SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 17 and 18; Probably localized in the outer membrane; Family membership. (492 aa)    
Predicted Functional Partners:
CAZ94220.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (20-93) and the Plug module (110-246) acting as a channel gate; The signal peptide is cleaved between the residues 19 and 20; Family membership.
 
   
 0.946
CAZ97680.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (32-105) and the Plug module (122-247) acting as a channel gate; The signal peptide is cleaved between the residues 26 and 27; Family membership.
 
 
 0.667
parB
Chromosome-partitioning protein parB; ParB is involved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Binds to the DNA origin of replication. Localized in the cytoplasm; High confidence in function and specificity.
  
 
 0.641
dacB
D-alanyl-D-alanine carboxypeptidase, also known as Penicillin-binding protein 4, is involved in the peptidoglycan biosynthesis. It hydrolyzes the D-Ala-D-Ala bond in the cross-linking peptide precursor, and performs the transpeptidation reaction between the D-Ala and the meso-2,6-diaminopimelate of adjacent crosslinking peptides of the bacterial cell wall; Belongs to the family S13 of the serine peptidases; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 27 and 28; Localized in the outer membrane; High confidence in function and specificity.
  
     0.633
CAZ95308.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (24-97) and the Plug module (113-240) acting as a channel gate; The signal peptide is cleaved between the residues 23 and 24; Family membership.
  
     0.610
CAZ95309.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 22 and 23; Probably localized in the outer membrane; Family membership.
  
     0.593
CAZ96694.1
Conserved membrane lipoprotein; Signal peptide of lipoprotein cleaved between the residues 16 and 17; Localized in the outer membrane; Conserved hypothetical protein.
  
     0.583
CAZ94978.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension (Secretin/TonB (STN) domain (67-119)) that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (142-216), and a Plug module (232-356) acting as the channel gate; The signal peptide is cleaved between the residue 21 and 22; Family membership.
  
 
   0.563
CAZ94437.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (31-104) and the Plug module (120-230) acting as a channel gate; The signal peptide is cleaved between the residues 27 and 28; Family membership.
  
     0.549
CAZ94221.1
Putative protein.
       0.536
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.