STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95539.1Conserved hypothetical membrane protein; Contains a N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein. (187 aa)    
Predicted Functional Partners:
CAZ95538.1
Protein that contains a C-terminal OmpA-like domain. OmpA-like domains are thought to be responsible for non-covalent interactions with peptidoglycan; Contains a uncleavable signal peptide; Localized in the cytoplasmic membrane; Function unclear.
 
     0.911
rpmA
Ribosomal protein L27 is part of the large ribosomal subunit (50S). It cross-links to the 23S rRNA and to the A and P site tRNAs. RpmA is essential for ribosome function, but its exact role is unclear; Belongs to the ribosomal protein L27p family; Localized in the cytoplasm; High confidence in function and specificity.
 
  
 0.847
CAZ98310.1
Conserved protein containing a von Willebrand factor type A (vWF) domain. vWF domains adopt a classic alpha/beta Rossmann fold and usually contains an unusual metal ion coordination site at its surface. Its exact function is unknown. Features a signal peptide cleaved between the residues 23 and 24. Localized in the periplasm; Family membership.
  
     0.543
CAZ98249.1
Conserved hypothetical protein; Localized in the cytoplasm.
 
     0.513
CAZ96842.1
Integrases are tyrosine recombinases that act by catalyzing the cutting and rejoining of the recombining DNA molecules utilizing a catalytic tyrosine for the strand cleavage. The cleavage of DNA is realized by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue; Contains a C-terminal Phage integrase domain; Belongs to the \phage\ integrase family, Tn4399-type Integrase subfamily; Localized in the cytoplasm; Family membership.
  
     0.501
CAZ96433.1
Conserved hypothetical protein; Protein with an uncleaved signal peptide; Seems localized in the cytoplasmic membrane.
  
     0.494
CAZ95761.1
Conserved hypothetical periplasmic protein; Contains a central Ig-like domain (residues 511-592); Signal peptide cleaved between the residues 26 and 27; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.481
CAZ94774.1
Conserved hypothetical membrane protein; Contains one transmembrane segment; Probably localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.469
CAZ95537.1
Hypothetical protein; Putatively localized in the cytoplasm.
       0.467
CAZ94796.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.462
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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