STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95588.1Conserved hypothetical protein; Protein Localized in the cytoplasm; Family membership. (142 aa)    
Predicted Functional Partners:
CAZ95589.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.563
rsmI
Methyltransferases; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.464
CAZ95586.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.460
CAZ95584.1
Conserved hypothetical membrane protein; Contains four transmembrane segments; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
       0.454
CAZ95587.1
Conserved hypothetical protein distantly related to the Uracil-DNA glycosylase superfamily; Localized in the cytoplasm.
       0.452
recJ
RecJ is a 5'-3' single-strand DNA exonuclease. Required for many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products which are available; Localized in the cytoplasm; High confidence in function and specificity.
       0.429
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.