STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95629.1TRAP transporter, large permease subunit; This protein is the large permease component of a tripartite ATP-independent periplasmic (TRAP) transport system that comprises an extracytoplasmic solute receptor protein and two transmembrane proteins. TRAP transporters are secondary carriers that use an electrochemical H+ gradient as the driving force for transport; Contains ten transmembrane helices; Localized in the cytoplasmic membrane; Specificity unclear. (431 aa)    
Predicted Functional Partners:
CAZ95631.1
This protein is the substrate-binding periplasmic subunit component of a tripartite ATP-independent periplasmic (TRAP) transport system that comprises an extracytoplasmic solute receptor protein and two transmembrane proteins. TRAP transporters are secondary carriers that use an electrochemical H+ gradient as the driving force for transport; Signal peptide of lipoprotein cleaved between the residues 19 and 20; Localized in the periplasmic space; Specificity unclear.
  
 0.985
CAZ95630.1
TRAP transporter, small permease subunit; This protein is the small permease component of a tripartite ATP-independent periplasmic (TRAP) transport system that comprises an extracytoplasmic solute receptor protein and two transmembrane proteins. TRAP transporters are secondary carriers that use an electrochemical H+ gradient as the driving force for transport; Contains four transmembrane helices; Localized in the cytoplasmic membrane; Specificity unclear.
 
 
 0.972
CAZ96100.1
The substrate-binding periplasmic subunit is a extracytoplasmic solute receptor, a component of a tripartite ATP-independent periplasmic (TRAP) transport system. The two other components of the system are two transmembrane proteins. TRAP transporters are secondary carriers that use an electrochemical H+ gradient as the driving force for transport; Contains a lipoprotein signal peptide cleaved between the residues 26 and 27; Anchored in the cytoplasmic membrane, in periplasmic side; Specificity unclear.
  
 0.958
uxaC
Uronate isomerase catalyzes the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate. It is involved in the pentose and glucuronate interconversion. Localized in the cytoplasm; High confidence in function and specificity.
  
  
 0.785
CAZ96101.1
The small permease subunit is a component of a tripartite ATP-independent periplasmic (TRAP) transport system. The two other components of the system are a second transmembrane proteins and a extracytoplasmic solute receptor. TRAP transporters are secondary carriers that use an electrochemical H+ gradient as the driving force for transport; Contains four transmembrane helices; Localized in the cytoplasmic membrane; Specificity unclear.
 
 
 0.554
CAZ95633.1
Belongs to the short-chain dehydrogenases/reductases (SDR) family, Glucose/ribitol dehydrogenase subfamily; Most dehydrogenases possess at least 2 domains, the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis; Localized in the cytoplasm; Family membership.
       0.445
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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