STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBBeta-xylosidase, family GH43; Enzyme that hydrolyzes the beta-1,4-D-xylans linkage, to remove successive D-xylose residues from the non-reducing termini; Belongs to the family 43 of the glycoside hydrolase (GH43); Protein localized in the cytoplasm; High confidence in function and specificity. (338 aa)    
Predicted Functional Partners:
xylP
Sugar transport protein; These integral membrane proteins mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters); Belongs to the sodium:galactoside symporter family; Contains 12 transmembrane segments; Localized in the cytoplasmic membrane; Family membership.
  
 0.987
xylA
Endo-beta-1,4-xylanase, family GH10; Enzyme that endohydrolyzes the beta-1,4-D-xylosidic linkages in xylans; Belongs to the family 10 of glycoside hydrolase (GH10); The signal peptide is cleaved between the residues 17 and 18; This sequence is a lipoporotein putatively localized in the outer membrane; High confidence in function and specificity.
  
 0.979
xynB-2
Endo-beta-1,4-xylanase, family GH10; Enzyme that Endohydrolyzes the beta-1,4-D-xylosidic linkages in xylans; Belongs to the family 10 of the glycoside hydrolases (GH10); This protein is a lipoprotein with a signal peptide cleaved between the residues 24 and 25, and probably localized in the outer membrane; High confidence in function and specificity.
  
 0.928
xynA
Endo-beta-1,4-xylanase, family GH10; Enzyme that Endohydrolyzes the beta-1,4-D-xylosidic linkages in xylans; Belongs to the family 10 of the glycoside hydrolases (GH10); This protein is a lipoprotein with a signal peptide cleaved between the residues 18 and 19 and probably localized in the outer membrane; Contains a PKD-like domain in its N-treminal region, probably involved in protein-carbohydrate interactions; High confidence in function and specificity.
   
 0.773
CAZ97654.1
Endo-1,4-beta-xylanase, family GH5; Endo-1,4-beta-xylanase catalyzes the endohydrolysis of 1,4-beta-D-xylosidic linkages in xylans. This enzyme belongs to the family 5 of the glycoside hydrolases. Features a signal peptide cleaved between residues 19 and 20. Localized in the periplasm; High confidence in function and specificity.
 
 
 0.641
CAZ95326.1
Conserved protein belonging to the DUF1593 family; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space and possibly secreted; Family membership.
  
  
 0.558
engA
Endoglucanase, family GH5; Endoglucanase catalyzes the endohydrolysis of the 1, 4-beta-D-glucosidic linkages in lichenan, cereal beta-D-glucans and carboxymethyl-cellulose and the 1,4-beta-D-xylosidic linkages in xylans. This enzyme is highly; Specificity unclear; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.503
xynB
Beta-xylosidase, family GH43; Beta-xylosidase is an intracellular xylan-degrading enzyme. It catalyzes the hydrolysis of 1,4-beta-D-xylans, to remove successive D-xylose residues from the non-reducing termini. It belongs to the family GH43 of the glycoside hydrolases; High confidence in function and specificity.
     0.468
afcA6
Alpha-L-fucosidase, family GH95; The alpha-L-fucosidase is responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside; Belongs to the family 95 of the glycoside hydrolases (GH95); Signal peptide cleaved between residues 25 and 26; Localized in the periplasmic space; High confidence in function and specificity.
 
     0.463
CAZ94329.1
This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear.
 
     0.460
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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