STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95689.1Nitrate/nitrite-specific MFS transporter protein; Putatively involved in the uptake of nitrate or extrusion of nitrite; The proteins contains 12 transmembrane segments; Localized in the cytoplasmic membrane; Function unclear. (470 aa)    
Predicted Functional Partners:
nirB
Nitrite reductase, required for nitrite assimilation (reducing nitrite to ammonia), catalyzes the second step of nitrate assimilation (denitrification); Binds 1 siroheme and 1 2Fe-2S cluster, uses FAD as cofactor; It is an homodimer which associates with nirD; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family; Localized in the cytoplasm; High confidence in function and specificity.
 
 0.992
narB/nirB
Respiratory nitrate/nitrite reductase; Bifunctional enzyme involved in the denitrification processes (nitrate respiration). It contains in its N-terminal part a nitrate reductase module required for nitrate assimilation (reducing nitrate to nitrite) using molybdopterin and 1 4Fe-4S cluster as cofactors and in its C-terminal part a nitrite reductase module required for nitrite assimilation (reducing nitrite to ammonia) using FAD, 4Fe-4S cluster and siroheme as cofactors; Belongs to Belongs to the prokaryotic molybdopterin-containing oxidoreductase family and to the nitrite and sulfite r [...]
 
 
 0.989
nirD
Nitrite reductase, small subunit; Protein that consists of a Rieske domain; The rieske domain has a 2Fe-2S centre; Associates with NirB and is required for activity reductase of NirB; High confidence in function and specificity.
 
 
 0.984
napA
Periplasmic nitrate reductase, catalytic subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
 
 0.941
ncd2
2-Nitropropane dioxygenase catalyzes the oxidation of nitroalkanes to produce the corresponding carbonyl compounds. It acts on 2-nitropropane better than on nitroethane and 1-nitropropane, and anionic forms of nitroalkanes are much better substrates than are neutral forms. It forms a homodimer and uses FMN as cofactor; Localized in the cytoplasm; High confidence in function and specificity.
  
 
 0.912
napB
The diheme cytochrome c napB is the small subunit of the periplasmic nitrate reductase (NAP). NapAB complex receives electrons from the membrane-anchored tetraheme napC protein, thus allowing electron flow between membrane and periplasm. Essential function for nitrate assimilation and may have a role in anaerobic metabolism. Features four consensus sequence Cys-x-x-Cys-His, where the histidine residue is one of the two axial ligands of the heme iron. Binds two hemes. Features an uncleaved signal peptide. Localized in the cytoplasmic membrane; High confidence in function and specificity.
   
 
  0.901
CAZ95679.1
Rubredoxin family protein; Conserved protein containing a C-terminal Rubredoxin-like domain. The most conserved feature of the rubredoxin-like domain is the cluster of four cysteines involved in iron binding (Cys-x-x-Cys-x(n)-Cys-x-x-Cys). This domain folds into a short three-stranded antiparallel beta-sheet and a number of loops; Localized in the cytoplasm; Family membership.
 
   
 0.821
CAZ95688.1
cAMP-binding dependent transcriptionnal regulator; This protein complexes with cAMP via an N-terminal cyclic nucleotide-binding domain and binds to specific DNA sites, via a C-terminal crp-type HTH domain, near the promoter to regulate the transcription of several catabolite-sensitive operons. The protein induces a severe bend in the DNA; Family membership.
 
  
 0.801
CAZ95683.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein.
 
     0.722
CAZ95694.1
The sensor histidine kinase belongs to two-component signal transduction systems. It catalyzes the ATP dependent autophosphorylation of a conserved histidine in its phosphoacceptor domain and the signal dependent phosphorylation of a conserved aspartic acid present in the response regulator receiver domain; Contains two transmembrane segments and an N-terminal PAS/PAC domain involved in many signalling proteins where they are used as a signal sensor domain; Localized in the cytoplasmic membrane; Family membership.
 
   
 0.624
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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