STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95799.1Hypothetical membrane protein; Contains nine transmembrane helices; Localized in the cytoplasmic membrane; Hypothetical protein. (412 aa)    
Predicted Functional Partners:
kdtA
3-deoxy-D-manno-octulosonic-acid transferase, family GT30; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.912
CAZ95801.1
Glycosyltransferase, family GT2; Glycosyltransferase putatively involved in the Lipopolysaccharide core or in the exopolysaccharide biosynthesis; Glycosyltransferase catalyzes the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds; Contains a C-terminal transmembrane segment; Belongs to the family 2 of glycosyl transferase (GT2), WaaE/kdtX subfamily; Localized in the cytoplasmic membrane; Family membership.
  
  
 0.830
CAZ96045.1
Conserved protein involved in exopolysaccharide biosynthesis. Its exact function is unknown. Contains five transmembrane helices. Localized in the cytoplasmic membrane; Function unclear.
  
  
 0.809
CAZ95804.1
Protein involved in exopolysaccharide biosynthesis. Its exact function is unknown; Contains five transmembrane helices Localized in the cytoplasmic membrane; Function unclear.
  
  
 0.804
wbgV
The protein WbgV was first found in an O antigen biosynthesis gene cluster in Enterobacteriaceae. Its exact function is still unknown; Localized in the cytoplasm; Function unclear.
       0.776
wbeiA
The protein WbeiA was first found in an O antigen biosynthesis gene cluster from Edwardsiella ictaluri. Its exact function is still unknown; Contains eleven transmembrane helices; Localized in the cytoplasmic membrane; Function unclear.
       0.773
CAZ95803.1
Glycosyltransferase, family GT2; Glycosyltransferase catalyzes the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. This enzyme is closely related to TuaG protein which is involved in the biosynthesis of theichuronic acid, a cell wall anionic polysaccharide in Firmicutes; Belongs to the family 2 of the glycosyltransferases (GT2); Localized in the cytoplasm; Specificity unclear.
  
  
 0.762
wbmB
The protein WbmB was first found in an O antigen biosynthesis operon from the genus Bordetella. Its exact function is still unknown; Localized in the cytoplasm; Function unclear.
  
  
 0.639
wzxA
O-antigen translocase; WzxA translocates undecaprenylpyrophosphate-bound O-antigen subunits from the cytoplasm to the periplasm. Wzx is an integral membrane protein involved in lipopolysaccharide biosynthesis; Localized in the cytoplasmic membrane; High confidence in function and specificity.
  
  
 0.555
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.522
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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