STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94253.1Putative protein. (49 aa)    
Predicted Functional Partners:
CAZ94252.1
The sensor proteins consist of a sensing beta-propeller fold periplasmic domain, variable in sequence, reflective of the many different environmental signals, and of a cytoplasmic part composed of a histidine kinase domain, a response regulator receiver domain and a response regulator effector domain (here a C-terminal AraC- type HTH domain); Contains a transmembrane segment; Localized in the cytoplasmic membrane; Family membership.
       0.718
idsA1
Iduronate-2-sulfatase, family S1-7; Iduronate-2-sulfatase, called also Chondroitinsulfatase is involved in the glycosaminoglycan degradation. It hydrolyzes the 2-sulfate groups from non-reducing-terminal iduronic acid residues in dermatan sulfate and heparan sulfate and heparin; Belongs to the family 1 of sulfatases (formylglycine-dependent sulfatases), subfamily 7; Putative lipoprotein with a signal peptide cleaved between the residues 16 and 17; Possibly localized in the outer membrane; High confidence in function and specificity.
       0.540
CAZ94250.1
Cytochrome c-containing protein; This protein has a modular architecture with a N-terminal cytochrome C and two domains of unknown function, a DUF1549 domain which includes a second cytochrome C and a C-terminal DUF1553 domain. Cytochromes c typically function in electron transfer, but c-type cytochrome centers are also found in the active sites of many enzymes. Contains a putative lipoprotein signal peptide cleaved between the residues 17 and 18; Possibly localized in the outer membrane; Function unclear.
       0.474
CAZ94251.1
Conserved hypothetical periplasmic protein; This protein likely adopts a beta-propeller fold; Contains a twin-arginine signal peptide; Localized in the periplasmic space; Conserved hypothetical protein.
       0.474
CAZ94248.1
Conserved hypothetical membrane protein; Contains five transmembrane helices in the N-terminal region; Contains a central motif reminiscent of the Planctomycete cytochrome C motif; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
       0.454
CAZ94249.1
Conserved hypothetical periplasmic protein; Protein containing a domain of unknown function DUF1501; Belongs to the alkaline-phosphatase clan; Contains a twin-arginine signal peptide; Localized in the periplasmic space; Family membership.
       0.454
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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