STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gldHLipoprotein involved in the gliding motility; Signal peptide cleaved between the residues 16 and 17; Probably localized in the outer membrane; Function unclear. (161 aa)    
Predicted Functional Partners:
CAZ95858.1
Conserved hypothetical protein; Protein highly Its role in Z. galactanivorans is unknown; Localized in the cytoplasm.
       0.820
pbp1A
Penicillin-binding protein 1A, family GT51; Penicillin-binding protein 1A is a class A PBP involved in the synthesis of cross-linked peptidoglycan from the lipid II intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits). The N-terminal domain belongs to the family 51 of the glycosyltransferases. Features an uncleaved signal peptide. Localized in the periplasm, anchored to the cytoplasmic membrane; High confidence in [...]
       0.820
gldD
Lipoprotein involved in the gliding motility; Signal peptide cleaved between the residues 17 and 18; localized in the cytoplasmic membrane; Function unclear.
  
   
 0.807
gldK
Lipoprotein involved in the gliding motility that contains an unknown function domain found in some eukaryotic and prokaryotic protein and in eukaryotic proteins required for post-translational modification of sulfatase; Signal peptide cleaved between the residues 17 and 18; Putatively localized in the outer membrane; Function unclear.
  
   
 0.800
gldJ
Lipoprotein involved in the gliding motility that contains an unknown function domain found in some eukaryotic and prokaryotic protein and in eukaryotic proteins required for post-translational modification of sulfatase; Signal peptide cleaved between the residues 23 and 24; Putatively localized in the outer membrane; Function unclear.
  
   
 0.800
gldN
Protein putatively involved in the gliding motility; Signal peptide cleaved between the residues 23 and 24; Localized in the periplasmic space; Function unclear.
  
   
 0.791
gldL
Membrane protein involved in the gliding motility; The GldL protein interacts with the GldK protein to inhibit the motility. GldL alone does not inhibit the motility; Contains two transmembrane segments; Localized in the cytoplasmic membrane; Function unclear.
  
   
 0.791
gldM
Protein involved in the gliding motility; Contains a N-terminal transmembrane segment; Anchored in the cytoplasmic membrane and exposed in the periplasmic space; Function unclear.
  
   
 0.790
gldB
Lipoprotein involved in the gliding motility; It is possible that GldB interacts with, or is involved in production of polysaccharides or glycoproteins; Signal peptide cleaved between the residues 16 and 17; Putatively localized in the cytoplasmic membrane; Function unclear.
  
   
 0.777
sprE
The SprE protein could be involved in the gliding motility; Contains four tetratrico peptide repeats (TPRs). TPRs mediate proteinprotein interactions. TPR adopts a helixturnhelix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices. SprE contains a prokaryotic lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the outer membrane; Function unclear.
 
   
 0.739
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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