STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idsA1Iduronate-2-sulfatase, family S1-7; Iduronate-2-sulfatase, called also Chondroitinsulfatase is involved in the glycosaminoglycan degradation. It hydrolyzes the 2-sulfate groups from non-reducing-terminal iduronic acid residues in dermatan sulfate and heparan sulfate and heparin; Belongs to the family 1 of sulfatases (formylglycine-dependent sulfatases), subfamily 7; Putative lipoprotein with a signal peptide cleaved between the residues 16 and 17; Possibly localized in the outer membrane; High confidence in function and specificity. (549 aa)    
Predicted Functional Partners:
CAZ96813.1
CBM6 containing protein; Conserved protein featuring a N-terminal conserved domain of unknown function, a central PKD domain and a C-terminal carbohydrate binding module of the family 6. Features a signal peptide cleaved between the residues 21 and 22. Localized in the periplasm; Conserved hypothetical protein.
  
     0.567
CAZ94253.1
Putative protein.
       0.540
CAZ94252.1
The sensor proteins consist of a sensing beta-propeller fold periplasmic domain, variable in sequence, reflective of the many different environmental signals, and of a cytoplasmic part composed of a histidine kinase domain, a response regulator receiver domain and a response regulator effector domain (here a C-terminal AraC- type HTH domain); Contains a transmembrane segment; Localized in the cytoplasmic membrane; Family membership.
       0.512
alyA3
Alginate lyase, family PL17; Alginate lyase catalyzes the eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. It belongs to the family 17 of the polysaccharide lyases. Features an uncleaved signal peptide. Features a signal peptide cleaved between residues 25 and 26. Localized in the periplasm; High confidence in function and specificity.
     
  0.499
CAZ97938.1
Conserved hypothetical periplasmic protein; Could be a possible enzyme acting with carbohydrates; Contains a signal peptide cleaved between the residues 30 and 31; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.490
CAZ96814.1
Beta-helix fold protein; This protein likely adopts a right handed parallel beta-helix fold. Displays also a C-terminal PKD domain; Signal peptide cleaved between the residues 28 and 29; Localized in the periplasmic space; Function unclear.
  
     0.442
dgoK
2-Dehydro-3-deoxygalactonokinase catalyzes the second step in D-galactonate degradation: ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate. Localized in the cytoplasm; High confidence in function and specificity.
  
     0.441
rhaT1
L-rhamnose/proton symporter is involved in the uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell. Can also transport L-mannose and L-xylose, but at reduced rates. Contains ten transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity.
  
 
   0.434
cgiA2
Iota-carrageenase, family GH82; The Iota-carrageenases hydrolyse the 1,4-beta-D-galactosidic linkages in the iota-carrgeenan giving the tetramer as the predominant product; Belongs to the family 82 of glycoside hydrolases (GH82); Signal peptide of lipoprotein cleaved between the residues 19 and 20; Localized in the outer membrane; High confidence in function and specificity.
  
     0.421
CAZ97319.1
Conserved hypothetical lipoprotein; Protein that could be involved in the carbohydrates metabolism; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 22 and 23; Localized in the outer membrane; Conserved hypothetical protein.
  
     0.400
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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