STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95921.1Conserved protein belonging to the DUF1460 family. Features a signal peptide cleaved between the residues 19 and 20. Localized in the periplasm; Family membership. (281 aa)    
Predicted Functional Partners:
CAZ95920.1
Putative protein.
       0.773
CAZ95922.1
Conserved hypothetical periplasmic protein; Contains a N-terminal GumN domain (unknown function); Signal peptide cleaved between the residues 17 and 18; Localized in the periplasmic space; Family membership.
 
     0.768
CAZ95404.1
Conserved hypothetical protein; Localized in the cytoplasm.
 
     0.722
ampG
Protein AmpG is a signal transducer in beta-lactamase induction. It probably acts as a permease in the beta-lactamase induction system and in peptidoglycan recycling. Belongs to the major facilitator superfamily. Features twelve transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
  
     0.722
CAZ96942.1
Rieske [2Fe-2S] iron-sulfur protein; Protein that contains an unknown function N-terminal domain and a C-terminal Rieske [2Fe-2S] domain; The rieske domain has a [2Fe-2S] centre. Two conserved cysteines that one Fe ion while the other Fe ion is coordinated by two conserved histidines; Prokaryotic lipoprotein signal peptide cleaved between the residues 25 and 26; Localized in the outer membrane; Function unclear.
 
 
   0.654
paeX
Pectin acetylesterase, family CE10; Pectin acetylesterase hydrolyzes acetyl groups in pectins, releasing acetates. This enzyme belongs to the family 10 of the carbohydrate esterases. Features a signal peptide cleaved between residues 18 and 19. Localized in the periplasm; High confidence in function and specificity.
 
    0.583
CAZ96912.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.582
CAZ95477.1
Conserved hypothetical membrane protein; Contains an uncleavable signal sequence; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.536
CAZ95263.1
N-Acetylmuramoyl-L-alanine amidase hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in peptidoglycan; Contains a signal peptide cleaved between the residues 27 and 28; Localized in the periplasmic space; High confidence in function and specificity.
 
     0.519
CAZ95923.1
Mechanosensitive channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation; Contains four transmembrane helices; Belongs to the small- conductance MS channels; Localized in the cytoplasmic membrane; Specificity unclear.
  
    0.505
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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