STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95953.1Conserved hypothetical membrane protein; Contains one central transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein. (242 aa)    
Predicted Functional Partners:
CAZ95954.1
RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Localized in the cytoplasm; Specifici [...]
 
 
 
 0.962
CAZ94995.1
RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership.
 
 
 
 0.840
CAZ95952.1
TPR repeats protein; Protein containing three N-terminal tetratrico peptide repeats (TPRs) and a C-terminal conserved domain of unknown function. TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Contains a C-terminal transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
   
 0.798
CAZ94993.1
TPR repeats protein; Conserved protein containing three N-terminal tetratrico peptide repeats (TPRs) and a C-terminal conserved domain of unknown function. TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Contains a C-terminal transmembrane helix; Localized in the cytoplasmic membrane; Function unclear.
 
   
 0.797
CAZ95955.1
Hypothetical lipoprotein; Protein that could adopt a right handed parallel beta-helix fold; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 18 and 19; Localized in the outer membrane; Hypothetical protein.
 
     0.623
CAZ95459.1
Conserved hypothetical membrane protein; Contains an uncleavable signal sequence; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.595
CAZ98635.1
Putative membrane lipoprotein; Lipoprotein signal peptide cleaved between the residues 19 and 20; Putatively localized in the outer membrane; Hypothetical protein.
  
     0.580
CAZ95602.1
Conserved hypothetical protein including an N-terminal region rich in glycine, reminiscent of the collagen triple helix repeats (GxxG); Contains a prokaryotic lipoprotein signal peptide cleavage between the residues 19 and 20; Localized in the outer membrane; Conserved hypothetical protein.
  
     0.565
CAZ95868.1
Hypothetical lpoprotein; Contains a N-terminal region rich in glycine, reminiscent of the collagen triple helix repeats (GxxG); Prokaryotic lipoprotein signal peptide cleaved between the residues 18 and 19; Localized in the outer membrane; Hypothetical protein.
  
     0.551
CAZ95455.1
Hypothetical protein. Putatively localized in the cytoplasm.
  
     0.541
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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