STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
lacZBeta-galactosidase, family GH2; Enzyme that catalyzes the hydrolysis of the beta- 1, 4 linkage at the terminal non-reducing of beta-D-galactosides, releasing a beta-D-galactose residue; Belongs to the family 2 of glycoside hydrolases (GH2); Signal peptide cleaved between residues 28 and 29; Possibly localized in the outer membrane; High confidence in function and specificity. (1070 aa)    
Predicted Functional Partners:
CAZ94527.1
Conserved protein belonging to the DUF608 family; Contains a signal peptide cleaved between the residues 37 and 38; Localized in the periplasmic space.
     
  0.900
CAZ94529.1
Conserved protein belonging to the DUF608 family; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 19 and 20; Localized in the outer membrane.
     
  0.900
xylA-2
Xylose isomerase is involved in xylose metabolism. It catalyzes the conversion of D-xylose into D-xylulose. It forms a homotetramer and binds 2 magnesium ions per subunit. Localized in the cytoplasm; High confidence in function and specificity.
    
 0.810
CAZ94439.1
Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols; Signal peptide of lipoprotein cleaved between the residues 15 and 16; Localized in the outer membrane; High confidence in function and specificity.
 
 
    0.807
CAZ97737.1
Glycoside hydrolase, family GH2; Modular enzyme with a N-terminal beta-galactosidase domain (belongs to the family 2 of glycoside hydrolases, TIM alpha/beta barrel fold) and two C-terminal fibronectin type III domain (FN3); Seems to have a signal peptide cleaved between the residues 20 and 21; Putatively localized in the periplasmic space; Family membership.
  
  
 
0.753
bgaA
Beta-galactosidase, family GH2; Enzyme belonging to the family 2 of glycoside hydrolases (GH2) which catalyzes the hydrolysis of the beta-1,4 linkage at the terminal non-reducing of beta-D-galactosides, releasing a beta-D-galactose residue; Possesses a putative C-terminal carbohydrate module (CBM6); Signal peptide cleaved between residues 19 and 20; Localized in the periplasmic space; High confidence in function and specificity.
  
  
 
0.753
bgaB
Beta-galactosidase, family GH2; Enzyme belonging to the family 2 of glycoside hydrolases (GH2) which catalyzes the hydrolysis of the beta-1,4 linkage at the terminal non-reducing of beta-D-galactosides, releasing a beta-D-galactose residue; Signal peptide cleaved between residues 20 and 21; Localized in the periplasmic space; High confidence in function and specificity.
  
  
 
0.753
bgaC
Beta-galactosidase, family GH2; Enzyme belonging to the family 2 of glycoside hydrolases (GH2) which catalyzes the hydrolysis of the beta-1,4 linkage at the terminal non-reducing, releasing a beta-D-galactose residue from beta-D-galactosides; Putative signal peptide cleaved between residues 19 and 20; Possibly localized in the periplasmic space; High confidence in function and specificity.
  
  
 
0.752
bgaE
Beta-galactosidase, family GH2; Modular protein with a N-terminal beta-galactosidase domain belonging to the family 2 of glycoside hydrolases (GH2, TIM alpha/beta barrel fold) and a C-terminal Carbohydrate Binding Module of family CBM35; Catalyzes the hydrolysis of the beta-1,4 linkage at the terminal non-reducing, releasing a beta-D-galactose residue from beta-D-galactosides; Signal peptide cleaved between residues 28 and 29; Localized in the periplasmic space; High confidence in function and specificity.
  
  
 
0.751
CAZ97739.1
The family 2 of glycoside Hydrolase (GH2, TIM alpha/beta barrel fold) contains the activities beta-galactosidase, beta-mannosidase, beta-glucuronidase and exo-beta-glucosaminidase; Signal peptide of lipoprotein cleaved between the residues 17 and 18; Localized in the outer membrane; Family membership.
  
  
 
0.751
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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