STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94269.1Glycoside hydrolase, family GH31; Glycoside hydrolases hydrolyse the glycosidic bond between two or more carbohydrates or between a carbohydrate and a non-carbohydrate moiety. This enzyme belongs to the family 31 of the glycoside hydrolases (GH 31); Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 16 and 17; Localized in the outer membrane; Specificity unclear. (722 aa)    
Predicted Functional Partners:
fucA10
Alpha-L-fucosidase, family GH29; The alpha-L-fucosidase is responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside; Belongs to the family 29 of glycoside hydrolases (GH29); Signal peptide cleaved between the residue 24 and 25; Localized in the periplasmic space; High confidence in function and specificity.
 
   
 0.718
xarB2
Xylosidase/arabinosidase, family GH3; XarB catalyzes the hydrolysis of terminal, non-reducing beta-D-xylose residues (or L-arabinose residues) with release of beta-D-xylose (or alpha-L-arabinose). This bifunctional enzyme belongs to the family 3 of the glycoside hydrolases. Features an uncleaved signal peptide. Localized in the cytoplasmic membrane; High confidence in function and specificity.
 
   
 0.573
alfA4
Alpha-L-fucosidase, family GH29; Modular protein that consists of an N-terminal alpha-L-fucosidase module belonging to the family 29 of glycoside hydrolases (GH29), responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside and a C-terminal domain that could be involved in the binding to specific ligands such as carbohydrate or lipids substrates; Signal peptide cleaved between the residue 27 and 28; Localized in the periplasmic space; High confidence in function and specificity.
 
   
 0.552
CAZ97588.1
Beta-helix fold protein; Protein that likely adopts a right handed parallel beta-helix fold; Contains a C-terminal PDZ domain responsible of protein-protein interaction by binding either the carboxyl-terminal sequences of proteins or internal peptide sequences suggesting that it could be a signaling protein; Prokaryotic lipoprotein signal peptide cleaved between 19 and 20; Localized in the outer membrane; Conserved hypothetical protein.
 
     0.525
CAZ97259.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 25 and 26; Putatively localized in the outer membrane; Family membership.
  
     0.477
CAZ94327.1
Hypothetical periplasmic protein; Signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Hypothetical protein.
  
   
 0.476
CAZ94267.1
Conserved hypothetical lipoprotein; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 19 and 20; Localized in the outer membrane; Conserved hypothetical protein.
       0.473
rraA1
Regulator of ribonuclease activity is a general modulator of RNA abundance which inhibits the endonuclease activity of the RNase E and thereby leads to increase the half-life of RNAs; Contains a Demethylmenaquinone methyltransferase domain; Localized in the cytoplasm; Conserved hypothetical protein.
       0.465
CAZ96816.1
Conserved hypothetical protein; Possibly localized in the cytoplasm.
  
     0.460
xarB1
Xylosidase/arabinosidase, family GH3; XarB catalyzes the hydrolysis of terminal, non-reducing beta-D-xylose residues (or L-arabinose residues) with release of beta-D-xylose (or alpha-L-arabinose). This bifunctional enzyme belongs to the family 3 of the glycoside hydrolases (GH3); Contains a signal peptide cleaved between the residues 24 and 25; Localized in the periplasm; High confidence in function and specificity.
 
   
 0.458
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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