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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fucA10Alpha-L-fucosidase, family GH29; The alpha-L-fucosidase is responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside; Belongs to the family 29 of glycoside hydrolases (GH29); Signal peptide cleaved between the residue 24 and 25; Localized in the periplasmic space; High confidence in function and specificity. (538 aa)    
Predicted Functional Partners:
alfA6
Alpha-L-fucosidase, family GH29; Modular protein that consists of an N-terminal alpha-L-fucosidase module belonging to the family 29 of glycoside hydrolases (GH29), responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside and a C-terminal domain that could be involved in the binding to specific ligands such as carbohydrate or lipids substrates; Signal peptide cleaved between the residue 19 and 20; Localized in the periplasmic space; High confidence in function and specificity.
  
     0.769
alfA3
Alpha-L-fucosidase, family GH29; Modular protein that consists of an N-terminal alpha-L-fucosidase module belonging to the family 29 of glycoside hydrolases (GH29), responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside and a C-terminal domain that could be involved in the binding to specific ligands such as carbohydrate or lipids substrates; Signal peptide cleaved between the residue 18 and 19; Localized in the periplasmic space; High confidence in function and specificity.
  
     0.762
alfaA2
Alpha-L-fucosidase, family GH29; Modular protein that consists of an N-terminal alpha-L-fucosidase module belonging to the family 29 of glycoside hydrolases (GH29), responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside and a C-terminal domain of two hundred residues that could be involved in the binding to specific ligands such as carbohydrate or lipids substrates; Signal peptide cleaved between the residue 19 and 20; Localized in the outer membrane; High confidence in function and specificity.
  
     0.761
fucA2
Alpha-L-fucosidase, family GH29; The alpha-L-fucosidase is responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside; Belongs to the family 29 of glycoside hydrolases (GH29); Signal peptide cleaved between the residue 24 and 25; Localized in the outer membrane; High confidence in function and specificity.
  
     0.758
CAZ94269.1
Glycoside hydrolase, family GH31; Glycoside hydrolases hydrolyse the glycosidic bond between two or more carbohydrates or between a carbohydrate and a non-carbohydrate moiety. This enzyme belongs to the family 31 of the glycoside hydrolases (GH 31); Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 16 and 17; Localized in the outer membrane; Specificity unclear.
 
   
 0.718
fucA3
Alpha-L-fucosidase, family GH29; The alpha-L-fucosidase is responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside; Belongs to the family 29 of glycoside hydrolases (GH29); Localized in the cytoplasm; High confidence in function and specificity.
  
     0.678
alfA1
Alpha-L-fucosidase, family GH29; Modular protein that consists of an N-terminal alpha-L-fucosidase module belonging to the family 29 of glycoside hydrolases (GH29), responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside and a C-terminal domain that could be involved in the binding to specific ligands such as carbohydrate or lipids substrates; Signal peptide cleaved between the residue 22 and 23; Localized in the periplasmic space; High confidence in function and specificity.
  
     0.602
CAZ94527.1
Conserved protein belonging to the DUF608 family; Contains a signal peptide cleaved between the residues 37 and 38; Localized in the periplasmic space.
  
     0.518
CAZ94529.1
Conserved protein belonging to the DUF608 family; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 19 and 20; Localized in the outer membrane.
  
     0.473
CAZ94271.1
Putative protein.
       0.447
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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