STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96046.1Membrane protein likely involved in the export of expolysaccharide repeating units from the cytoplasm into the periplasm in a process analogous to O-unit export; Contains a C-terminal transmembrane helix; Prokaryotic lipoprotein signal peptide cleaved between the residues 18 and 19; Localized in the cytoplasmic membrane; Specificity unclear. (253 aa)    
Predicted Functional Partners:
wzcA
Tyrosine-protein kinase; May be involved in the production and the transport of exopolysaccharides; Contains a N-terminal transmembrane segment; Belongs to the etk/wzc family; Localized in the cytoplasmic membrane; Specificity unclear.
 
 
 0.995
etkA
Tyrosine-protein kinase; May be involved in the production and the transport of exopolysaccharides; Contains a N-terminal transmembrane segment; Belongs to the etk/wzc family; Localized in the cytoplasmic membrane; Specificity unclear.
 
 0.989
ptkA
Tyrosine-protein kinase; May be involved in the production and the transport of exopolysaccharides; Contains a N-terminal and a central transmembrane segment; Putatively autophosphorylated on several Tyr residues; Belongs to the etk/wzc family; Localized in the cytoplasmic membrane; Specificity unclear.
 
 0.989
CAZ96045.1
Conserved protein involved in exopolysaccharide biosynthesis. Its exact function is unknown. Contains five transmembrane helices. Localized in the cytoplasmic membrane; Function unclear.
 
  
 0.945
CAZ97922.1
This membrane protein is likely involved in the export of expolysaccharide repeating units from the cytoplasm into the periplasm in a process analogous to O-unit export; Contains a C-terminal transmembrane helix; lipoprotein signal peptide cleaved between the residues 31 and 32; Localized in the cytoplasmic membrane; Specificity unclear.
  
  
 
0.920
capD
CapD is involved in EPS/LPS biosynthesis. Its exact function is unknown; Contains five transmembrane helices; Localized in the cytoplasmic membrane; Function unclear.
  
  
 0.586
rfbX
O-antigen transporter; May be involved in the Lipopolysaccharide O antigen biosynthesis, translocating the nascent polysaccharidic O-antigen molecules and/or ligating them to lipid A core units; Contains 12 transmembrane segments; Localized in the cytoplasmic membrane; Function unclear.
 
  
 0.572
CAZ95164.1
Conserved protein involved in exopolysaccharide biosynthesis. Its exact function is unknown. Contains five transmembrane helices. Localized in the cytoplasmic membrane; Specificity unclear.
 
  
 0.530
CAZ95606.1
Conserved protein involved in exopolysaccharide biosynthesis. Its exact function is unknown. Contains four transmembrane helices; Localized in the cytoplasmic membrane; Function unclear.
 
  
 0.527
CAZ95804.1
Protein involved in exopolysaccharide biosynthesis. Its exact function is unknown; Contains five transmembrane helices Localized in the cytoplasmic membrane; Function unclear.
 
  
 0.524
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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