STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
algDGDP-mannose 6-dehydrogenase catalyzes the oxidation of guanosine diphospho-D-mannose (GDP-D-mannose) to GDP-D-mannuronic acid. In Pseudomonas aeruginosa, this activated sugar is the precursor for alginate polymerization. AlgD belongs to the UDP-glucose/GDP- mannose dehydrogenase family, a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Localized in the cytoplasm; High confidence in function and specificity. (434 aa)    
Predicted Functional Partners:
manC
Mannose-1-phosphate guanylyltransferase, also known as GDP-mannose pyrophosphorylase, is Involved in the biosynthesis of exopolysaccharides. It catalyzes the reaction: GDP + alpha-D-mannose 1-phosphate = phosphate + GDP-mannose. Localized in the cytoplasm; High confidence in function and specificity.
 
 
 0.941
gmdA
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
 
 0.919
CAZ97918.1
UDP-glucuronic acid decarboxylase converts the UDP-D-glucuronic acid to UDP-D-xylose and CO2. This enzyme is involved in the nucleotide sugar metabolism; Belongs to the NAD dependent epimerase/dehydratase family, Rossmann fold Superfamily; Localized in the cytoplasm; High confidence in function and specificity.
 
 0.909
uxuB
D-mannonate oxidoreductase or Fructuronate reductase catalyzes the NAD-dependent reduction of fructuronate into mannonate; Belongs to the Long-chain mannitol dehydrogenase family; Localized in the cytoplasm; High confidence in function and specificity.
     
 0.814
xylA-2
Xylose isomerase is involved in xylose metabolism. It catalyzes the conversion of D-xylose into D-xylulose. It forms a homotetramer and binds 2 magnesium ions per subunit. Localized in the cytoplasm; High confidence in function and specificity.
     
 0.812
CAZ96054.1
Conserved hypothetical protein; Contains a domain of unknown function DUF354. This family mainly contains proteins from Archae; Localized in the cytoplasm.
 
     0.810
scrK1
Fructokinase catalyzes the transfert of phosphate group from ATP to convert the fructose to fructose-6-phosphate, which is an entry point into glycolysis (Embden-Meyerhof pathway) via conversion into glucose-6-phosphate; Belongs to the carbohydrate kinase pfkB superfamily, bacterial fructokinase family; Localized in the cytoplasm; High confidence in function and specificity.
    
  0.802
CAZ97612.1
Belongs to the short-chain dehydrogenases/reductases (SDR) family, Glucose/ribitol dehydrogenase subfamily; Most dehydrogenases possess at least 2 domains, the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis; Localized in the cytoplasm; Family membership.
    
 0.802
scrK2
Fructokinase catalyzes the transfer of a phosphate group from ATP to convert the fructose to fructose-6-phosphate, which is an entry point into glycolysis (Embden-Meyerhof pathway) via conversion into glucose-6-phosphate; Belongs to the carbohydrate kinase PfkB superfamily, bacterial fructokinase family; Localized in the cytoplasm; Family membership.
    
  0.802
CAZ98819.1
Belongs to the short-chain dehydrogenases/reductases (SDR) family, Glucose/ribitol dehydrogenase subfamily; Most dehydrogenases possess at least 2 domains, the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis; Localized in the cytoplasm; Family membership.
    
 0.802
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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