STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94272.1SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 20 and 21; Putatively localized in the outer membrane; Family membership. (530 aa)    
Predicted Functional Partners:
CAZ94273.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules (Here, possibly sugars) that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (58-134) and the Plug module (148-255) acting as a channel gate; The signal peptide is cleaved between the residues 23 and 24; Family membership.
 
     0.946
CAZ97605.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules (here, possibly sulphated sugars) that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (53-126) and the Plug module (142-258) acting as a channel gate; The signal peptide is cleaved between the residues 37 and 38; Family membership.
 
 
   0.823
CAZ94386.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (85-159), and a Plug module (175-281) acting as the channel gate; The signal peptide is cleaved between the residue 32 and 33; Family membership.
 
 
   0.753
CAZ97745.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (22-95) and the Plug module (111-220) acting as a channel gate; The signal peptide is cleaved between the residues 20 and 21; Family membership.
 
 
   0.749
CAZ94985.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (57-131) and the Plug module (147-263) acting as a channel gate; The signal peptide is cleaved between the residues 29 and 30; Family membership.
  
     0.745
CAZ95545.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (39-113) and the Plug module (129-236) acting as a channel gate; The signal peptide is cleaved between the residues 27 and 28; Family membership.
 
 
   0.699
CAZ97719.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (58-131) and the Plug module (147-263) acting as a channel gate; The signal peptide is cleaved between the residues 38 and 39; Family membership.
 
 
   0.688
CAZ98083.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules (here, Possibly sugars) that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (120-190), and a Plug module (210-315) acting as the channel gate; The signal peptide is cleaved between the residue 28 and 29; Family membership.
 
 
   0.675
CAZ96447.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension (Secretin/TonB (STN) domain (50-102)) that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (121-195) and a Plug module (211-315) acting as the channel gate; The signal peptide is cleaved between the residue 19 and 20; Family membership.
  
     0.649
CAZ94339.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 20 and 21; Probably localized in the outer membrane; Family membership.
  
     0.631
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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