STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (500 aa)    
Predicted Functional Partners:
araB
Ribulokinase catalyzes the phosphorylation of ribulose. This is the second step of the arabinose catabolism. AraB belongs to the FGGY family of the carbohydrate kinases; High confidence in function and specificity.
 
 0.999
araD
L-ribulose-5-phosphate 4-epimerase catalyzes the conversion of L-ribulose 5-phosphate into D-xylulose 5-phosphate. This is the third step of the L-arabinose catabolism. AraD belongs to the class II aldolase family. Binds one zinc ion by subunit. Localized in the cytoplasm; High confidence in function and specificity.
 
 0.995
xynB
Beta-xylosidase, family GH43; Beta-xylosidase is an intracellular xylan-degrading enzyme. It catalyzes the hydrolysis of 1,4-beta-D-xylans, to remove successive D-xylose residues from the non-reducing termini. It belongs to the family GH43 of the glycoside hydrolases; High confidence in function and specificity.
 
 
 0.888
sglT
Sodium/glucose symporter SglT; Actively transports glucose into cells by Na(+) cotransport. Sodium/substrate symport is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient is used to drive solute accumulation against a concentration gradient. Features fourteen transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.738
CAZ96082.1
The generic name 'NUDIX hydrolases' corresponds to pyrophosphatases cleaving a NUcleoside DIphosphate linked to some other moiety X. These enzymes hydrolyze diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP). Localized in the cytoplasm; Specificity unclear.
  
    0.504
CAZ97286.1
Conserved protein belonging to the DUF1680 family protein; Signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Conserved hypothetical protein.
 
    0.465
CAZ98075.1
Conserved protein belonging to the DUF1680 family protein. Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Family membership.
 
    0.405
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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