STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96100.1The substrate-binding periplasmic subunit is a extracytoplasmic solute receptor, a component of a tripartite ATP-independent periplasmic (TRAP) transport system. The two other components of the system are two transmembrane proteins. TRAP transporters are secondary carriers that use an electrochemical H+ gradient as the driving force for transport; Contains a lipoprotein signal peptide cleaved between the residues 26 and 27; Anchored in the cytoplasmic membrane, in periplasmic side; Specificity unclear. (336 aa)    
Predicted Functional Partners:
CAZ96104.1
The large permease subunit is a component of a tripartite ATP-independent periplasmic (TRAP) transport system. The two other components of the system are a second transmembrane proteins and a extracytoplasmic solute receptor. TRAP transporters are secondary carriers that use an electrochemical H+ gradient as the driving force for transport; Contains ten transmembrane helices; Localized in the cytoplasmic membrane; Specificity unclear.
  
 0.992
CAZ96101.1
The small permease subunit is a component of a tripartite ATP-independent periplasmic (TRAP) transport system. The two other components of the system are a second transmembrane proteins and a extracytoplasmic solute receptor. TRAP transporters are secondary carriers that use an electrochemical H+ gradient as the driving force for transport; Contains four transmembrane helices; Localized in the cytoplasmic membrane; Specificity unclear.
 
  
 0.967
CAZ95629.1
TRAP transporter, large permease subunit; This protein is the large permease component of a tripartite ATP-independent periplasmic (TRAP) transport system that comprises an extracytoplasmic solute receptor protein and two transmembrane proteins. TRAP transporters are secondary carriers that use an electrochemical H+ gradient as the driving force for transport; Contains ten transmembrane helices; Localized in the cytoplasmic membrane; Specificity unclear.
  
 0.958
CAZ95630.1
TRAP transporter, small permease subunit; This protein is the small permease component of a tripartite ATP-independent periplasmic (TRAP) transport system that comprises an extracytoplasmic solute receptor protein and two transmembrane proteins. TRAP transporters are secondary carriers that use an electrochemical H+ gradient as the driving force for transport; Contains four transmembrane helices; Localized in the cytoplasmic membrane; Specificity unclear.
 
  
 0.880
CAZ96097.1
Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA. This protein may also be involved in the regulation of purine biosynthesis; Localized in the cytoplasm; High confidence in function and specificity.
       0.777
CAZ96105.1
Esterase; Putative esterase. Adopts an alpha/beta hydrolase fold; Contains a signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Specificity unclear.
       0.752
CAZ96094.1
Conserved hypothetical periplasmic protein; Contains a domain of unknown function DUF1501; Belongs to the alkaline-phosphatase clan; Contains a twin-arginine signal peptide; Localized in the periplasmic space; Family membership.
       0.586
CAZ96096.1
Hypothetical periplasmic protein; This protein likely adopts a beta-propeller fold; Contains a twin-arginine signal peptide; Localized in the periplasmic space; Family membership.
       0.586
CAZ96092.1
Cytochrome c-containing protein; This protein has a modular architecture with a N-terminal cytochrome C (residues 19-136) and three domains of unknown function: a DUF1549 domain which includes a second cytochrome C (161-395), a central domain adopting a jelly roll fold (concavalin A-like, 449-666) and a C-terminal DUF1553 domain (762-1077). Cytochromes c typically function in electron transfer, but c-type cytochrome centers are also found in the active sites of many enzymes; Prokaryotic lipoprotein signal peptide cleaved between the residues 18 and 19; Localized in the cytoplasmic and/ [...]
       0.578
CAZ96090.1
Conserved hypothetical protein; Contains a central transmembrane helix; Localized in the cytoplasmic membrane.
       0.415
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.