STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94274.1The AraC-type transcriptional regulators are usually involved in the positive regulation of catabolic, metabolic and transport operons; Contains a N-terminal transmembrane segment followed by two periplasmic tetratrico peptide repeats (TPRs) and a C-terminal cytoplasmic AraC-type HTH domain. The TPR repeats and the AraC-type HTH domain are separated by a second transmembrane segment. TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Localized in the cytoplasmic membrane; Function unclear. (614 aa)    
Predicted Functional Partners:
CAZ96302.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 22 and 23; Localized in the cytoplasmic membrane; Family membership.
  
     0.740
CAZ95529.1
Conserved hypothetical membrane protein; Contains ten transmembrane helices; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.612
CAZ96301.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (49-123) and the Plug module (139-247) acting as a channel gate; The signal peptide is cleaved between the residues 23 and 24; Family membership.
  
     0.599
CAZ94345.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Would contain a lipoprotein signal peptide cleaved between the residues 24 and 25; Probably localized in the outer membrane; Family membership.
  
     0.572
CAZ97642.1
Large protein containing a central carbohydrate binding module of the family 35 (CBM35) and at least two other domains of unknown function; Contains an uncleavable signal peptide; Localized in the cytoplasmic membrane; Family membership.
  
     0.568
CAZ94977.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 20 and 21; Probably localized in the outer membrane; Family membership.
  
     0.555
CAZ97258.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (34-108) and the Plug module (124-231) acting as a channel gate; The signal peptide is cleaved between the residues 30 and 31; Family membership.
  
     0.497
CAZ95094.1
Conserved protein belonging to the creatinase family, but its exact function is unclear; Localized in the cytoplasm; Family membership.
  
     0.469
CAZ94344.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (30-103) and the Plug module (119-242) acting as a channel gate; The signal peptide is cleaved between the residues 28 and 29; Family membership.
  
     0.433
CAZ97646.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 19 and 20; Putatively localized in the outer membrane but the determination of the membrane identity for the protein localization is not clear; Family membership.
  
     0.415
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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