STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96118.1Conserved hypothetical protein; Localized in the cytoplasm. (108 aa)    
Predicted Functional Partners:
speB
Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine; Adopts a 3-layer alpha-beta-alpha fold; Binds a manganese ion; Belongs to the arginase family; Localized in the cytoplasm; High confidence in function and specificity.
 
     0.867
speA
Arginine decarboxylase catalyzes the biosynthesis of agmatine from arginine. It is involved in the putrescine biosynthesis pathway. Uses the pyridoxal- phosphate as prosthetic group linked to a conserved lysine residue; Binds a magnesium ion; Localized in the cytoplasm; High confidence in function and specificity.
 
     0.861
CAZ96115.1
Deoxyhypusine synthase-like protein; Deoxyhypusine synthase transfers alkyl or aryl groups on an acceptor molecule. It likely catalyzes the NAD(+)-dependent dehydrogenation of spermidine, resulting in the formation of an enzyme-imine intermediate by transfer of the 4-aminobutylidene group from dehydrospermidine to the active site lysine residue. The 4-aminobutylidene group is then transfered from the enzyme intermediate to an acceptor molecule; Localized in the cytoplasm; Specificity unclear.
 
     0.843
CAZ94557.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.669
CAZ98193.1
Conserved hypothetical membrane protein; Contains an uncleavable signal sequence; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.642
CAZ94114.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.612
CAZ98685.1
Conserved hypothetical membrane protein; Contains a N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.608
CAZ97268.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.606
CAZ94808.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.606
CAZ94096.1
Conserved hypothetical protein. Localized in the cytoplasm.
  
     0.604
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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