STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96295.1Metalloendopeptidase, family M12; Endopeptidase Containing a large C-terminal region, encompassing a fibronectin type 3 domain and a proprotein convertase P-domain necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence; Belongs to the family 12 of the metallopeptidases (M12); Signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Specificity unclear. (1261 aa)    
Predicted Functional Partners:
CAZ96296.1
Protein that contains two type-III fibronectin (FN3) domains. Structures of individual FN3 domains have revealed a conserved beta sandwich fold also found in bacterial glycosyde hydrolases and other proteins; Contains a putative lipoprotein signal peptide cleaved between the residues 16 and 17; Possibly localized in the outer membrane; Function unclear.
 
     0.885
CAZ95761.1
Conserved hypothetical periplasmic protein; Contains a central Ig-like domain (residues 511-592); Signal peptide cleaved between the residues 26 and 27; Localized in the periplasmic space; Conserved hypothetical protein.
  
 
   0.716
CAZ95760.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.709
CAZ95839.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 23 and 24; localized in the periplasmic space; Conserved hypothetical protein.
  
    0.676
CAZ94798.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Hypothetical protein.
  
     0.671
CAZ94704.1
Conserved protein containing five thrombospondin type 3 repeats (TSP3). TSP3 are calcium binding domains; Features an uncleaved signal peptide; Localized in the cytoplasmic meembrane; Conserved hypothetical protein.
  
 
   0.603
CAZ96912.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein.
 
 
   0.588
ribF
Riboflavin biosynthesis protein RibF is a protein that includes a Riboflavin kinase activity and a FMN adenylyltransferase activity; Localized in the cytoplasm; High confidence in function and specificity.
       0.585
CAZ95487.1
Putative membrane lipoprotein; Lipoprotein that contains a C-terminal domain of 150 residues Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Hypothetical protein.
  
     0.584
ggcX
Vitamin K-dependent gamma-glutamyl carboxylase is involved in the Vitamin K-dependent carboxylation of multiple amino-terminal glutamate residues in various proteins. It converts glutamate residues to gamma-carboxyglutamate; Contains six transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity.
  
    0.581
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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