STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94292.1Conserved hypothetical membrane protein; Contains a N-terminal and a C-terminal transmembrane segments and, between both transmembrane helices, a large periplasmic domain; Localized in the cytoplasmic membrane; Conserved hypothetical protein. (500 aa)    
Predicted Functional Partners:
CAZ94291.1
ABC-2 type exporter, permease component; ABC-2 Type (ATP-binding cassette) transporter, membrane domain; ABC-2 type transporters are responsible for extrusion of a variety of compounds across biological membranes; Contains six transmembrane segments; The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport; Localized in the cytoplasmic membrane; Family membership.
  
 0.994
gldF
Gliding motility permease, ABC-2 type exporter; Belongs to Type 2 ABC (ATP-binding cassette) transporter, permease domain (ABC membrane); Involved in the gliding motility; Contains six transmembrane segments; The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport; Localized in the cytoplasmic membrane; Specificity unclear.
  
 0.977
CAZ94290.1
ABC transporter, ATPase component; This protein is the nucleotide-binding domain of the ABC transporters (ABC ATPase); Responsible for coupling the energy of ATP hydrolysis to conformational changes in the permease component (ABC membrane); Localized in the cytoplasm near of the cytoplasmic membrane by association with the permease component; Family membership.
 
  
 0.942
gldA
Gliding motility ABC transporter, ATPase component; GldA is the nucleotide-binding domain of the permease GldF. GldA (ABC ATPase) and GldF (ABC membrane) constitute an ABC transporter involved either in the exportation of exopolysaccharides essential to gliding motility or could function to export protein components of the gliding machinery to the periplasm or cell surface; Localized in the cytopolasm; Family membership.
 
  
 0.772
CAZ94293.1
Hypothetical membrane protein; Contains a N-terminal transmembrane segment; Localized in the cytoplasmic membrane; Hypothetical protein.
       0.716
CAZ98757.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 23 and 24; Putatively localized in the outer membrane; Family membership.
  
     0.633
CAZ94295.1
ABC transporter, ATPase component; This protein is the nucleotide-binding domain of the ABC transporters (ABC ATPase); Responsible for coupling the energy of ATP hydrolysis to conformational changes in the permease component (ABC membrane); Localized in the cytoplasm near of the cytoplasmic membrane by association with the permease component; Belongs to the type I secretion system; Family membership.
 
  
 0.619
CAZ94294.1
Conserved hypothetical membrane protein; Contains a C-terminal transmembrane segments; Signal peptide cleaved between the residues 27 and 28; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
     0.594
CAZ96636.1
Conserved hypothetical protein; Signal peptide cleaved between the residues 28 and 29; Possibly localized in the outer membrane.
  
     0.578
CAZ94289.1
Hypothetical protein; Putatively localized in the cytoplasm.
       0.568
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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