Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CAZ96379.1 | CAZ96380.1 | ZOBELLIA_2223 | ZOBELLIA_2224 | DeoR-type transcription regulator are repressors of sugar and nucleoside metabolic systems. The effector molecules are generally phosphorylated intermediates of the relevant metabolic pathway. Contains a N-terminal DNA-binding DeoR-type HTH domain. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain; Localized in the cytoplasm; Family membership. | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | 0.562 |
| CAZ96380.1 | CAZ96379.1 | ZOBELLIA_2224 | ZOBELLIA_2223 | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | DeoR-type transcription regulator are repressors of sugar and nucleoside metabolic systems. The effector molecules are generally phosphorylated intermediates of the relevant metabolic pathway. Contains a N-terminal DNA-binding DeoR-type HTH domain. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain; Localized in the cytoplasm; Family membership. | 0.562 |
| CAZ96380.1 | CAZ96381.1 | ZOBELLIA_2224 | ZOBELLIA_2225 | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (21-99) and the Plug module (116-229) acting as a channel gate; The signal peptide is cleaved between the residues 19 and 20; Family membership. | 0.774 |
| CAZ96380.1 | CAZ96382.1 | ZOBELLIA_2224 | ZOBELLIA_2226 | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | Conserved hypothetical protein distantly related to the glycoside hydrolases of the families GH37 and GH63 (clan GH-G); Localized in the cytoplasm. | 0.597 |
| CAZ96380.1 | CAZ97694.1 | ZOBELLIA_2224 | ZOBELLIA_3556 | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of catabolic, metabolic and transport operons; Contains a N-terminal LacI-type HTH DNA-binding domain involved in the binding of the protein to the operator sequences in the DNA and a C-terminal domain involved in the binding of inducers; Localized in the cytoplasm; Family membership. | 0.665 |
| CAZ96380.1 | gltA-2 | ZOBELLIA_2224 | ZOBELLIA_909 | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | Glutamate synthase [NADPH] large chain; Glutamate synthase is a key enzyme in the early stages of the assimilation of ammonia. It is a complex iron-sulfur flavoprotein catalyzing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Glutamate synthase forms an aggregate of 4 catalytic active heterodimers, consisting of a large and a small subunit (GltB). GltA binds as cofactors a 3Fe-4S cluster, a FAD and a FMN. Localized i [...] | 0.593 |
| CAZ96380.1 | rbsB | ZOBELLIA_2224 | ZOBELLIA_4260 | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | Ribose ABC importer, periplasmic component; RbsB is the D-ribose-binding protein involved in the high-affinity D-ribose membrane transport system; Belongs to the bacterial solute-binding protein 2 family; Seems to have a uncleavable signal sequence; Localized in the cytoplasmic membrane and exposed in the periplasmic space; High confidence in function and specificity. | 0.511 |
| CAZ96380.1 | rbsC | ZOBELLIA_2224 | ZOBELLIA_4262 | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | Ribose ABC importer, permease component; Part of the binding-protein-dependent ABC transporter system for D-ribose. Probably responsible for the translocation of the substrate across the membrane; Contains seven transmembrane segments; Belongs to the binding-protein-dependent transport system permease family; Localized in the cytoplasmic membrane; High confidence in function and specificity. | 0.470 |
| CAZ96381.1 | CAZ96380.1 | ZOBELLIA_2225 | ZOBELLIA_2224 | TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (21-99) and the Plug module (116-229) acting as a channel gate; The signal peptide is cleaved between the residues 19 and 20; Family membership. | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | 0.774 |
| CAZ96381.1 | CAZ96382.1 | ZOBELLIA_2225 | ZOBELLIA_2226 | TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (21-99) and the Plug module (116-229) acting as a channel gate; The signal peptide is cleaved between the residues 19 and 20; Family membership. | Conserved hypothetical protein distantly related to the glycoside hydrolases of the families GH37 and GH63 (clan GH-G); Localized in the cytoplasm. | 0.893 |
| CAZ96382.1 | CAZ96380.1 | ZOBELLIA_2226 | ZOBELLIA_2224 | Conserved hypothetical protein distantly related to the glycoside hydrolases of the families GH37 and GH63 (clan GH-G); Localized in the cytoplasm. | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | 0.597 |
| CAZ96382.1 | CAZ96381.1 | ZOBELLIA_2226 | ZOBELLIA_2225 | Conserved hypothetical protein distantly related to the glycoside hydrolases of the families GH37 and GH63 (clan GH-G); Localized in the cytoplasm. | TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (21-99) and the Plug module (116-229) acting as a channel gate; The signal peptide is cleaved between the residues 19 and 20; Family membership. | 0.893 |
| CAZ97694.1 | CAZ96380.1 | ZOBELLIA_3556 | ZOBELLIA_2224 | LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of catabolic, metabolic and transport operons; Contains a N-terminal LacI-type HTH DNA-binding domain involved in the binding of the protein to the operator sequences in the DNA and a C-terminal domain involved in the binding of inducers; Localized in the cytoplasm; Family membership. | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | 0.665 |
| CAZ97694.1 | gltA-2 | ZOBELLIA_3556 | ZOBELLIA_909 | LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of catabolic, metabolic and transport operons; Contains a N-terminal LacI-type HTH DNA-binding domain involved in the binding of the protein to the operator sequences in the DNA and a C-terminal domain involved in the binding of inducers; Localized in the cytoplasm; Family membership. | Glutamate synthase [NADPH] large chain; Glutamate synthase is a key enzyme in the early stages of the assimilation of ammonia. It is a complex iron-sulfur flavoprotein catalyzing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Glutamate synthase forms an aggregate of 4 catalytic active heterodimers, consisting of a large and a small subunit (GltB). GltA binds as cofactors a 3Fe-4S cluster, a FAD and a FMN. Localized i [...] | 0.593 |
| gltA-2 | CAZ96380.1 | ZOBELLIA_909 | ZOBELLIA_2224 | Glutamate synthase [NADPH] large chain; Glutamate synthase is a key enzyme in the early stages of the assimilation of ammonia. It is a complex iron-sulfur flavoprotein catalyzing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Glutamate synthase forms an aggregate of 4 catalytic active heterodimers, consisting of a large and a small subunit (GltB). GltA binds as cofactors a 3Fe-4S cluster, a FAD and a FMN. Localized i [...] | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | 0.593 |
| gltA-2 | CAZ97694.1 | ZOBELLIA_909 | ZOBELLIA_3556 | Glutamate synthase [NADPH] large chain; Glutamate synthase is a key enzyme in the early stages of the assimilation of ammonia. It is a complex iron-sulfur flavoprotein catalyzing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Glutamate synthase forms an aggregate of 4 catalytic active heterodimers, consisting of a large and a small subunit (GltB). GltA binds as cofactors a 3Fe-4S cluster, a FAD and a FMN. Localized i [...] | LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of catabolic, metabolic and transport operons; Contains a N-terminal LacI-type HTH DNA-binding domain involved in the binding of the protein to the operator sequences in the DNA and a C-terminal domain involved in the binding of inducers; Localized in the cytoplasm; Family membership. | 0.593 |
| rbsB | CAZ96380.1 | ZOBELLIA_4260 | ZOBELLIA_2224 | Ribose ABC importer, periplasmic component; RbsB is the D-ribose-binding protein involved in the high-affinity D-ribose membrane transport system; Belongs to the bacterial solute-binding protein 2 family; Seems to have a uncleavable signal sequence; Localized in the cytoplasmic membrane and exposed in the periplasmic space; High confidence in function and specificity. | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | 0.511 |
| rbsB | rbsC | ZOBELLIA_4260 | ZOBELLIA_4262 | Ribose ABC importer, periplasmic component; RbsB is the D-ribose-binding protein involved in the high-affinity D-ribose membrane transport system; Belongs to the bacterial solute-binding protein 2 family; Seems to have a uncleavable signal sequence; Localized in the cytoplasmic membrane and exposed in the periplasmic space; High confidence in function and specificity. | Ribose ABC importer, permease component; Part of the binding-protein-dependent ABC transporter system for D-ribose. Probably responsible for the translocation of the substrate across the membrane; Contains seven transmembrane segments; Belongs to the binding-protein-dependent transport system permease family; Localized in the cytoplasmic membrane; High confidence in function and specificity. | 0.999 |
| rbsC | CAZ96380.1 | ZOBELLIA_4262 | ZOBELLIA_2224 | Ribose ABC importer, permease component; Part of the binding-protein-dependent ABC transporter system for D-ribose. Probably responsible for the translocation of the substrate across the membrane; Contains seven transmembrane segments; Belongs to the binding-protein-dependent transport system permease family; Localized in the cytoplasmic membrane; High confidence in function and specificity. | The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear. | 0.470 |
| rbsC | rbsB | ZOBELLIA_4262 | ZOBELLIA_4260 | Ribose ABC importer, permease component; Part of the binding-protein-dependent ABC transporter system for D-ribose. Probably responsible for the translocation of the substrate across the membrane; Contains seven transmembrane segments; Belongs to the binding-protein-dependent transport system permease family; Localized in the cytoplasmic membrane; High confidence in function and specificity. | Ribose ABC importer, periplasmic component; RbsB is the D-ribose-binding protein involved in the high-affinity D-ribose membrane transport system; Belongs to the bacterial solute-binding protein 2 family; Seems to have a uncleavable signal sequence; Localized in the cytoplasmic membrane and exposed in the periplasmic space; High confidence in function and specificity. | 0.999 |