STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96386.1DinB family protein; The DNA damage-inducible (din) genes are coordinately regulated and together compose a global regulatory network that has been termed the SOS-like or SOB regulon; Belongs to the DinB family; Localized in the cytoplasm; Function unclear. (166 aa)    
Predicted Functional Partners:
CAZ96387.1
Conserved hypothetical protein; Probably localized in the cytoplasm.
 
     0.934
CAZ96816.1
Conserved hypothetical protein; Possibly localized in the cytoplasm.
 
     0.778
CAZ96379.1
DeoR-type transcription regulator are repressors of sugar and nucleoside metabolic systems. The effector molecules are generally phosphorylated intermediates of the relevant metabolic pathway. Contains a N-terminal DNA-binding DeoR-type HTH domain. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain; Localized in the cytoplasm; Family membership.
 
     0.764
CAZ98084.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 16 and 17; Probably localized in the outer membrane; Family membership.
  
     0.578
hemN
Oxygen-independent coproporphyrinogen III oxidase is involved in Porphyrin biosynthesis. It Catalysis the reaction: Coproporphyrinogen-III + 2 S-adenosyl-L-methionine = protoporphyrinogen-IX + 2 CO2 + 2 L-methionine + 2 5'-deoxyadenosine; Binds 1 4Fe-4S cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine; Localized in the cytoplasm; High confidence in function and specificity.
       0.497
glxK
Glycerate kinase; Enzyme involved in glycine, serine and threonine metabolism, Glycerolipid metabolism and Glyoxylate and dicarboxylate metabolism; Localized in the cytoplasm; High confidence in function and specificity; Belongs to the glycerate kinase type-1 family.
       0.473
CAZ98333.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.466
nisA
Sodium/iodide symporter; Transporter that mediates iodide uptake. Sodium/substrate symport is a widespread mechanism of solute transport across cytoplasmic membranes. Thereby the energy stored in an inwardly directed electrochemical sodium gradient is used to drive solute accumulation against a concentration gradient; Contains fourteen transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.464
CAZ96389.1
Stress protein probably induced when the cell is exposed to stress agents or when conditions cause growth arrest; Contains two copies of the universal stress protein (usp) domain; Belongs to the Usp family. Members of the Usp family are predicted to be related to the MADS- box proteins and bind to DNA; Localized in the cytoplasm; Family membership.
       0.439
CAZ98358.1
SAM-dependent methyltransferase transfers from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms in DNA, RNA, proteins and small molecules. Its exact specificity is unknown; Localized in the cytoplasm; Specificity unclear.
 
   
 0.431
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.