STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scdACell wall-related protein ScdA; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family. (239 aa)    
Predicted Functional Partners:
CAZ96403.1
The transcriptional regulators with the Rrf2-type HTH domain control a variety of operons that encode iron-sulfur-containing proteins as well as other proteins involved in electron transport. Other rrf2-type HTH proteins are repressors of genes involved in nitrite or iron metabolism. The C-terminal part of the rrf2-type HTH domain contains 3 conserved cysteine residues that may bind an Fe-S cluster. Contains a DNA-binding, winged helix-turn-helix (wHTH) domain. Localized in the cytoplasm; Family membership.
 
  
 0.901
CAZ94376.1
The transcriptional regulators with the Rrf2-type HTH domain control a variety of operons that encode iron-sulfur-containing proteins as well as other proteins involved in electron transport. Other rrf2-type HTH proteins are repressors of genes involved in nitrite or iron metabolism. The C-terminal part of the rrf2-type HTH domain contains 3 conserved cysteine residues that may bind an Fe-S cluster. Contains a DNA-binding, winged helix-turn-helix (wHTH) domain. Localized in the cytoplasm; Family membership.
 
  
 0.775
CAZ96399.1
Conserved hypothetical membrane protein; Contains twelve transmembrane segments; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
    0.698
nosZ
Nitrous-oxide reductase is a copper-containing enzyme that catalyses the two-electron reduction of the greenhouse gas N2O to N2. It is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide. Homodimer that Binds 6 copper ions per subunit. Signal peptide of lipoprotein cleaved between the residues 20 and 21. Localized in the cytoplasmic membrane; High confidence in function and specificity.
 
    0.678
nosL
NosL is one of the accessory lipoproteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocenter assembly. Signal peptide cleaved between the residues 17 and 18. Localized in the outer membrane; High confidence in function and specificity.
 
     0.668
nosY
Copper ABC importer, permease component; ABC (ATP-binding cassette) transporter, membrane domain. Proteins responsible for import of multi-copper across biological membranes. Contains six transmembrane segmemts; The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport; Localized in the cytoplasmic membrane; High confidence in function and specificity.
 
     0.650
nosD
Copper-binding periplasmic protein; Protein which is thought to insert copper into the exported nitrous oxide reductase apoenzyme (NosZ). Belongs to the nitrous oxide reductase operon. Signal peptide cleaved between the residues 22 and 23. Localized in the periplasmic space; High confidence in function and specificity.
 
     0.646
CAZ96393.1
Conserved hypothetical membrane protein; Contains four transmembranes segments; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
     0.612
CAZ96401.1
Conserved hypothetical membrane protein; Contains three C-terminal transmembrane segments; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
       0.602
fdxA2
Ferredoxins are electron carrier proteins with an iron-sulfur as cofactor and that transfer electrons in a wide variety of metabolic reactions. Belongs to the putidaredoxin, terpredoxin and adrenodoxin sub-family and uses 2Fe-2S cluster as cofactor ligated at four conserved cysteine residues. The general core structure consists of beta(2)-alpha-beta(2). Localized in the cytoplasm; High confidence in function and specificity.
  
  
 0.595
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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