STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96404.1Globin-like protein; Truncated hemoglobin; Family membership. (130 aa)    
Predicted Functional Partners:
cat2
Catalysis of the transfer of a coenzyme A (CoA) group to 4-hydroxybutyrate; High confidence in function and specificity.
       0.701
CAZ96403.1
The transcriptional regulators with the Rrf2-type HTH domain control a variety of operons that encode iron-sulfur-containing proteins as well as other proteins involved in electron transport. Other rrf2-type HTH proteins are repressors of genes involved in nitrite or iron metabolism. The C-terminal part of the rrf2-type HTH domain contains 3 conserved cysteine residues that may bind an Fe-S cluster. Contains a DNA-binding, winged helix-turn-helix (wHTH) domain. Localized in the cytoplasm; Family membership.
 
    0.634
ccoH
Protein that consists of a FixH family domain. Could be a cytochrome cbb3 oxidase maturation protein; Contains one N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Family membership.
 
     0.499
CAZ97141.1
The exact function of this DsbA-like protein is unknown; Belongs to the Thioredoxin family, DSBA subfamily; Localized in the cytoplasm; Family membership.
  
  
 0.483
scdA
Cell wall-related protein ScdA; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
  
    0.481
ccoG
4Fe-4S ferredoxin; Belongs to the ccoGHIS operon. Features five transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
 
     0.468
ccoP
Cytochrome cbb3 oxidase, CcoP subunit; Belongs to the ccoNOPQ operon. Features three transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
 
     0.468
ccoNO
Fusion of the subunits CcoN and CcoO of the Cytochrome cbb3 oxidase. Converts the ferrocytochrome to ferricytochrome. Belongs to the ccoNOQP operon. Contains 13 transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity.
 
     0.454
CAZ96406.1
Vanadium-dependent Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles; Signal peptide cleaved between the residues 21 and 22; localized in the periplasmic space; Specificity unclear.
       0.451
fdxA2
Ferredoxins are electron carrier proteins with an iron-sulfur as cofactor and that transfer electrons in a wide variety of metabolic reactions. Belongs to the putidaredoxin, terpredoxin and adrenodoxin sub-family and uses 2Fe-2S cluster as cofactor ligated at four conserved cysteine residues. The general core structure consists of beta(2)-alpha-beta(2). Localized in the cytoplasm; High confidence in function and specificity.
 
     0.420
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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