STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpEPenicillin-binding protein 4*, family S12; Penicillin-binding protein 4* or PBP 4A is probably involved in peptidoglycan biosynthesis. Belongs to the family 12 of the serine peptidases. Signal peptide cleaved between the residues 20 and 21. Localized in the periplasmic space; High confidence in function and specificity. (439 aa)    
Predicted Functional Partners:
CAZ96424.1
Conserved protein belonging to the DUF456 family. Features four transmembrane helices. Localized in the cytoplasmic membrane; Conserved hypothetical protein.
       0.752
CAZ98596.1
Protein belonging to the family 12 of serine peptidases (S12). The active site residues Ser and Lys form the catalytic dyad and are found in the motif Ser-Xaa-Thr-Lys; Signal peptide cleaved between the residues 26 and 27; Localized in the periplasmic space; Function unclear.
  
     0.712
CAZ95907.1
Serine peptidase belonging to the family S12, which includes D-Ala-D-Ala carboxypeptidase B and aminopeptidase DmpB. The active site residues Ser and Lys form the catalytic dyad and are found in the motif Ser-Xaa- Thr-Lys. Localized in the cytoplasm; Specificity unclear.
  
     0.621
CAZ96425.1
Transcriptional repressor. The BlaI like repressors form homodimers that specifically bind DNA operator/promoter sequences. Followed by a blaR1-like regulator protein; High confidence in function and specificity.
       0.496
CAZ96426.1
Modular protein containing a N-terminal BlaR1-like regulatory module and two C-terminal TonB domains. BlaR1-like regulatory proteins are membrane-spanning signal transducers that contain a N-terminal metallopeptidase-M56 domain, possibly involved in the proteolytic inactivation of the BlaI-like repressor, and a central extracellular binding protein domain of unknown specificity. TonB domain, suggested to span the periplasm, is found in the C-terminal part of the protein TonB that is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria; Contains three transmembran [...]
       0.484
CAZ96427.1
O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear.
       0.484
CAZ96739.1
Conserved hypothetical lipoprotein; Protein belonging to the DUF1343 family. Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the cytoplasmic and/or outer membrane; Conserved hypothetical protein.
 
  
 0.425
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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