Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CAZ94995.1 | CAZ96268.1 | ZOBELLIA_937 | ZOBELLIA_2110 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. | Endonuclease/exonuclease/phosphatase family protein; Contains an OB-fold nucleic acid binding domain and an endonuclease/phosphatase domain; Signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Family membership. | 0.486 |
| CAZ94995.1 | CAZ96427.1 | ZOBELLIA_937 | ZOBELLIA_2271 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. | O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear. | 0.528 |
| CAZ95954.1 | CAZ96427.1 | ZOBELLIA_1901 | ZOBELLIA_2271 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Localized in the cytoplasm; Specifici [...] | O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear. | 0.484 |
| CAZ96268.1 | CAZ94995.1 | ZOBELLIA_2110 | ZOBELLIA_937 | Endonuclease/exonuclease/phosphatase family protein; Contains an OB-fold nucleic acid binding domain and an endonuclease/phosphatase domain; Signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Family membership. | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. | 0.486 |
| CAZ96268.1 | CAZ96427.1 | ZOBELLIA_2110 | ZOBELLIA_2271 | Endonuclease/exonuclease/phosphatase family protein; Contains an OB-fold nucleic acid binding domain and an endonuclease/phosphatase domain; Signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Family membership. | O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear. | 0.497 |
| CAZ96338.1 | CAZ96427.1 | ZOBELLIA_2182 | ZOBELLIA_2271 | Deoxyribonuclease I. Catalysis of the endonucleolytic cleavage of DNA to 5'-phosphodinucleotide and 5'-phosphooligonucleotide end products. Features a signal peptide cleaved between the residues 18 and 19. Localized in the periplasm; Specificity unclear. | O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear. | 0.619 |
| CAZ96424.1 | CAZ96425.1 | ZOBELLIA_2268 | ZOBELLIA_2269 | Conserved protein belonging to the DUF456 family. Features four transmembrane helices. Localized in the cytoplasmic membrane; Conserved hypothetical protein. | Transcriptional repressor. The BlaI like repressors form homodimers that specifically bind DNA operator/promoter sequences. Followed by a blaR1-like regulator protein; High confidence in function and specificity. | 0.558 |
| CAZ96424.1 | CAZ96426.1 | ZOBELLIA_2268 | ZOBELLIA_2270 | Conserved protein belonging to the DUF456 family. Features four transmembrane helices. Localized in the cytoplasmic membrane; Conserved hypothetical protein. | Modular protein containing a N-terminal BlaR1-like regulatory module and two C-terminal TonB domains. BlaR1-like regulatory proteins are membrane-spanning signal transducers that contain a N-terminal metallopeptidase-M56 domain, possibly involved in the proteolytic inactivation of the BlaI-like repressor, and a central extracellular binding protein domain of unknown specificity. TonB domain, suggested to span the periplasm, is found in the C-terminal part of the protein TonB that is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria; Contains three transmembran [...] | 0.496 |
| CAZ96424.1 | CAZ96427.1 | ZOBELLIA_2268 | ZOBELLIA_2271 | Conserved protein belonging to the DUF456 family. Features four transmembrane helices. Localized in the cytoplasmic membrane; Conserved hypothetical protein. | O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear. | 0.514 |
| CAZ96424.1 | pbpE | ZOBELLIA_2268 | ZOBELLIA_2267 | Conserved protein belonging to the DUF456 family. Features four transmembrane helices. Localized in the cytoplasmic membrane; Conserved hypothetical protein. | Penicillin-binding protein 4*, family S12; Penicillin-binding protein 4* or PBP 4A is probably involved in peptidoglycan biosynthesis. Belongs to the family 12 of the serine peptidases. Signal peptide cleaved between the residues 20 and 21. Localized in the periplasmic space; High confidence in function and specificity. | 0.752 |
| CAZ96425.1 | CAZ96424.1 | ZOBELLIA_2269 | ZOBELLIA_2268 | Transcriptional repressor. The BlaI like repressors form homodimers that specifically bind DNA operator/promoter sequences. Followed by a blaR1-like regulator protein; High confidence in function and specificity. | Conserved protein belonging to the DUF456 family. Features four transmembrane helices. Localized in the cytoplasmic membrane; Conserved hypothetical protein. | 0.558 |
| CAZ96425.1 | CAZ96426.1 | ZOBELLIA_2269 | ZOBELLIA_2270 | Transcriptional repressor. The BlaI like repressors form homodimers that specifically bind DNA operator/promoter sequences. Followed by a blaR1-like regulator protein; High confidence in function and specificity. | Modular protein containing a N-terminal BlaR1-like regulatory module and two C-terminal TonB domains. BlaR1-like regulatory proteins are membrane-spanning signal transducers that contain a N-terminal metallopeptidase-M56 domain, possibly involved in the proteolytic inactivation of the BlaI-like repressor, and a central extracellular binding protein domain of unknown specificity. TonB domain, suggested to span the periplasm, is found in the C-terminal part of the protein TonB that is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria; Contains three transmembran [...] | 0.959 |
| CAZ96425.1 | CAZ96427.1 | ZOBELLIA_2269 | ZOBELLIA_2271 | Transcriptional repressor. The BlaI like repressors form homodimers that specifically bind DNA operator/promoter sequences. Followed by a blaR1-like regulator protein; High confidence in function and specificity. | O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear. | 0.776 |
| CAZ96425.1 | pbpE | ZOBELLIA_2269 | ZOBELLIA_2267 | Transcriptional repressor. The BlaI like repressors form homodimers that specifically bind DNA operator/promoter sequences. Followed by a blaR1-like regulator protein; High confidence in function and specificity. | Penicillin-binding protein 4*, family S12; Penicillin-binding protein 4* or PBP 4A is probably involved in peptidoglycan biosynthesis. Belongs to the family 12 of the serine peptidases. Signal peptide cleaved between the residues 20 and 21. Localized in the periplasmic space; High confidence in function and specificity. | 0.496 |
| CAZ96426.1 | CAZ96424.1 | ZOBELLIA_2270 | ZOBELLIA_2268 | Modular protein containing a N-terminal BlaR1-like regulatory module and two C-terminal TonB domains. BlaR1-like regulatory proteins are membrane-spanning signal transducers that contain a N-terminal metallopeptidase-M56 domain, possibly involved in the proteolytic inactivation of the BlaI-like repressor, and a central extracellular binding protein domain of unknown specificity. TonB domain, suggested to span the periplasm, is found in the C-terminal part of the protein TonB that is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria; Contains three transmembran [...] | Conserved protein belonging to the DUF456 family. Features four transmembrane helices. Localized in the cytoplasmic membrane; Conserved hypothetical protein. | 0.496 |
| CAZ96426.1 | CAZ96425.1 | ZOBELLIA_2270 | ZOBELLIA_2269 | Modular protein containing a N-terminal BlaR1-like regulatory module and two C-terminal TonB domains. BlaR1-like regulatory proteins are membrane-spanning signal transducers that contain a N-terminal metallopeptidase-M56 domain, possibly involved in the proteolytic inactivation of the BlaI-like repressor, and a central extracellular binding protein domain of unknown specificity. TonB domain, suggested to span the periplasm, is found in the C-terminal part of the protein TonB that is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria; Contains three transmembran [...] | Transcriptional repressor. The BlaI like repressors form homodimers that specifically bind DNA operator/promoter sequences. Followed by a blaR1-like regulator protein; High confidence in function and specificity. | 0.959 |
| CAZ96426.1 | CAZ96427.1 | ZOBELLIA_2270 | ZOBELLIA_2271 | Modular protein containing a N-terminal BlaR1-like regulatory module and two C-terminal TonB domains. BlaR1-like regulatory proteins are membrane-spanning signal transducers that contain a N-terminal metallopeptidase-M56 domain, possibly involved in the proteolytic inactivation of the BlaI-like repressor, and a central extracellular binding protein domain of unknown specificity. TonB domain, suggested to span the periplasm, is found in the C-terminal part of the protein TonB that is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria; Contains three transmembran [...] | O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear. | 0.872 |
| CAZ96426.1 | pbpE | ZOBELLIA_2270 | ZOBELLIA_2267 | Modular protein containing a N-terminal BlaR1-like regulatory module and two C-terminal TonB domains. BlaR1-like regulatory proteins are membrane-spanning signal transducers that contain a N-terminal metallopeptidase-M56 domain, possibly involved in the proteolytic inactivation of the BlaI-like repressor, and a central extracellular binding protein domain of unknown specificity. TonB domain, suggested to span the periplasm, is found in the C-terminal part of the protein TonB that is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria; Contains three transmembran [...] | Penicillin-binding protein 4*, family S12; Penicillin-binding protein 4* or PBP 4A is probably involved in peptidoglycan biosynthesis. Belongs to the family 12 of the serine peptidases. Signal peptide cleaved between the residues 20 and 21. Localized in the periplasmic space; High confidence in function and specificity. | 0.484 |
| CAZ96427.1 | CAZ94995.1 | ZOBELLIA_2271 | ZOBELLIA_937 | O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear. | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. | 0.528 |
| CAZ96427.1 | CAZ95954.1 | ZOBELLIA_2271 | ZOBELLIA_1901 | O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear. | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Localized in the cytoplasm; Specifici [...] | 0.484 |
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