STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96451.1Conserved protein containing a N-terminal domain of unknown function and a C-terminal Carbohydrate Binding Module of family 22. Lipoprotein signal peptide cleaved between the residues 23 and 24; Localized in the cytoplasmic membrane; Family membership. (529 aa)    
Predicted Functional Partners:
CAZ96452.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 22 and 23; Putatively localized in the outer membrane; Family membership.
       0.732
CAZ96453.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules (here, possibly sugars) that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (30-104) and the Plug module (120-227) acting as a channel gate; The signal peptide is cleaved between the residues 24 and 25; Family membership.
       0.693
CAZ96450.1
Putative protein.
       0.491
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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