STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96480.1Hypothetical membrane protein; Signal peptide cleaved between the residues 27 and 28; Putatively localised in the outer membrane; Hypothetical protein. (178 aa)    
Predicted Functional Partners:
CAZ97111.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.716
CAZ96440.1
Conserved hypothetical membrane protein; Contains two N-terminal transmembrane segments; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.688
CAZ97279.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (24-102) and the Plug module (143-223) acting as a channel gate; The signal peptide is cleaved between the residues 23 and 24; High confidence in function and specificity.
  
     0.660
CAZ97166.1
DUF6 family protein; Integral membrane protein belonging to the DUF6 family. Features ten transmembrane helices. Localized in the cytoplasmic membrane; Family membership.
  
     0.650
sucA
The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); High confidence in function and specificity.
       0.591
CAZ98871.1
Conserved beta helix fold protein; Possible lipoprotein that consists of a pectin lyase like domain suggesting a beta helix fold for this protein; Signal peptide cleaved between the residues 25 and 26; probably localized in the outer membrane; Conserved hypothetical protein.
  
     0.551
CAZ96479.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.538
sucB
Dihydrolipoamide succinyltransferase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
       0.490
CAZ96795.1
Hypothetical membrane protein; Contains three N-terminal and one C-terminal transmembrane segments; Localized in the cytoplasmic membrane; Hypothetical protein.
  
     0.490
CAZ98192.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.481
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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