STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96652.1Probable SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 16 and 17; Probably localized in the outer membrane; Family membership. (475 aa)    
Predicted Functional Partners:
CAZ96653.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (25-98) and the Plug module (115-241) acting as a channel gate; The signal peptide is cleaved between the residues 22 and 23; Family membership.
   
 0.947
CAZ96649.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (25-98) and the Plug module (115-224) acting as a channel gate; The signal peptide is cleaved between the residues 22 and 23; Family membership.
   
 0.782
CAZ97680.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (32-105) and the Plug module (122-247) acting as a channel gate; The signal peptide is cleaved between the residues 26 and 27; Family membership.
 
 
 0.744
CAZ95087.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (35-108) and the Plug module (125-253) acting as a channel gate; The signal peptide is cleaved between the residues 27 and 28; Family membership.
 
     0.704
CAZ96651.1
Hypothetical membrane protein; Contains a lipoprotein signal peptide cleaved between the residues 17 and 18; Putatively adopts a beta-helix fold; Localized in the outer membrane; Hypothetical protein.
       0.689
parB
Chromosome-partitioning protein parB; ParB is involved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Binds to the DNA origin of replication. Localized in the cytoplasm; High confidence in function and specificity.
  
 
 0.641
CAZ95812.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (24-82) and the Plug module (113-241) acting as a channel gate; The signal peptide is cleaved between the residues 22 and 23; Family membership.
 
 
 0.605
CAZ97203.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension (Secretin/TonB (STN) domain (50-101)) that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (106-180) and a Plug module (197-327) acting as the channel gate; The signal peptide is cleaved between the residue 22 and 23; Family membership.
     0.539
CAZ95053.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension (Secretin/TonB (STN) domain) that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (123-197) and a Plug module (214-344) acting as the channel gate; The signal peptide is cleaved between the residue 17 and 18; Family membership.
     0.534
CAZ96654.1
Putative protein.
       0.516
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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