Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CAZ94327.1 | CAZ94329.1 | ZOBELLIA_254 | ZOBELLIA_256 | Hypothetical periplasmic protein; Signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Hypothetical protein. | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | 0.460 |
| CAZ94327.1 | kduI2 | ZOBELLIA_254 | ZOBELLIA_255 | Hypothetical periplasmic protein; Signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Hypothetical protein. | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. | 0.492 |
| CAZ94329.1 | CAZ94327.1 | ZOBELLIA_256 | ZOBELLIA_254 | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | Hypothetical periplasmic protein; Signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Hypothetical protein. | 0.460 |
| CAZ94329.1 | CAZ95326.1 | ZOBELLIA_256 | ZOBELLIA_1270 | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | Conserved protein belonging to the DUF1593 family; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space and possibly secreted; Family membership. | 0.422 |
| CAZ94329.1 | CAZ97769.1 | ZOBELLIA_256 | ZOBELLIA_3631 | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | Polygalacturonase, family GH28; The polygalacturonases catalyze the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans; The tertiary structures show a stack of parallel beta strands that are coiled into a large helix; Belongs to the family 28 of glycoside hydrolases (GH28); Signal peptide of lipoprotein cleaved between the residues 19 and 20; Localized in the outer membrane; Specificity unclear. | 0.531 |
| CAZ94329.1 | CAZ97770.1 | ZOBELLIA_256 | ZOBELLIA_3632 | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | Polygalacturonase, family GH28; The polygalacturonases catalyze the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans; The tertiary structures show a stack of parallel beta strands that are coiled into a large helix; Belongs to the family 28 of glycoside hydrolases (GH28); Signal peptide cleaved between the residues 21 and 22; Localized in the outer membrane and possibly secreted; Specificity unclear. | 0.433 |
| CAZ94329.1 | kduI1 | ZOBELLIA_256 | ZOBELLIA_189 | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. | 0.647 |
| CAZ94329.1 | kduI2 | ZOBELLIA_256 | ZOBELLIA_255 | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. | 0.903 |
| CAZ94329.1 | kduI3 | ZOBELLIA_256 | ZOBELLIA_3459 | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. | 0.650 |
| CAZ94329.1 | kduI4 | ZOBELLIA_256 | ZOBELLIA_3807 | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. | 0.646 |
| CAZ94329.1 | pelA2 | ZOBELLIA_256 | ZOBELLIA_3774 | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | Pectate lyase, family PL1; Modular protein with a N-terminal TolA-like domain and a C-terminal pectate lyase domain. Pectate lyase catalyzes the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. The catalytic domain belongs to the family 1 of the polysaccharide lyases (PL1). Contains an uncleavable signal peptide; Localized in the cytoplasmic membrane; High confidence in function and specificity. | 0.424 |
| CAZ94329.1 | xylB | ZOBELLIA_256 | ZOBELLIA_162 | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | Beta-xylosidase, family GH43; Enzyme that hydrolyzes the beta-1,4-D-xylans linkage, to remove successive D-xylose residues from the non-reducing termini; Belongs to the family 43 of the glycoside hydrolase (GH43); Protein localized in the cytoplasm; High confidence in function and specificity. | 0.460 |
| CAZ95326.1 | CAZ94329.1 | ZOBELLIA_1270 | ZOBELLIA_256 | Conserved protein belonging to the DUF1593 family; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space and possibly secreted; Family membership. | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | 0.422 |
| CAZ95326.1 | pelA2 | ZOBELLIA_1270 | ZOBELLIA_3774 | Conserved protein belonging to the DUF1593 family; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space and possibly secreted; Family membership. | Pectate lyase, family PL1; Modular protein with a N-terminal TolA-like domain and a C-terminal pectate lyase domain. Pectate lyase catalyzes the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. The catalytic domain belongs to the family 1 of the polysaccharide lyases (PL1). Contains an uncleavable signal peptide; Localized in the cytoplasmic membrane; High confidence in function and specificity. | 0.496 |
| CAZ95326.1 | xylB | ZOBELLIA_1270 | ZOBELLIA_162 | Conserved protein belonging to the DUF1593 family; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space and possibly secreted; Family membership. | Beta-xylosidase, family GH43; Enzyme that hydrolyzes the beta-1,4-D-xylans linkage, to remove successive D-xylose residues from the non-reducing termini; Belongs to the family 43 of the glycoside hydrolase (GH43); Protein localized in the cytoplasm; High confidence in function and specificity. | 0.558 |
| CAZ97769.1 | CAZ94329.1 | ZOBELLIA_3631 | ZOBELLIA_256 | Polygalacturonase, family GH28; The polygalacturonases catalyze the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans; The tertiary structures show a stack of parallel beta strands that are coiled into a large helix; Belongs to the family 28 of glycoside hydrolases (GH28); Signal peptide of lipoprotein cleaved between the residues 19 and 20; Localized in the outer membrane; Specificity unclear. | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | 0.531 |
| CAZ97769.1 | CAZ97770.1 | ZOBELLIA_3631 | ZOBELLIA_3632 | Polygalacturonase, family GH28; The polygalacturonases catalyze the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans; The tertiary structures show a stack of parallel beta strands that are coiled into a large helix; Belongs to the family 28 of glycoside hydrolases (GH28); Signal peptide of lipoprotein cleaved between the residues 19 and 20; Localized in the outer membrane; Specificity unclear. | Polygalacturonase, family GH28; The polygalacturonases catalyze the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans; The tertiary structures show a stack of parallel beta strands that are coiled into a large helix; Belongs to the family 28 of glycoside hydrolases (GH28); Signal peptide cleaved between the residues 21 and 22; Localized in the outer membrane and possibly secreted; Specificity unclear. | 0.814 |
| CAZ97770.1 | CAZ94329.1 | ZOBELLIA_3632 | ZOBELLIA_256 | Polygalacturonase, family GH28; The polygalacturonases catalyze the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans; The tertiary structures show a stack of parallel beta strands that are coiled into a large helix; Belongs to the family 28 of glycoside hydrolases (GH28); Signal peptide cleaved between the residues 21 and 22; Localized in the outer membrane and possibly secreted; Specificity unclear. | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | 0.433 |
| CAZ97770.1 | CAZ97769.1 | ZOBELLIA_3632 | ZOBELLIA_3631 | Polygalacturonase, family GH28; The polygalacturonases catalyze the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans; The tertiary structures show a stack of parallel beta strands that are coiled into a large helix; Belongs to the family 28 of glycoside hydrolases (GH28); Signal peptide cleaved between the residues 21 and 22; Localized in the outer membrane and possibly secreted; Specificity unclear. | Polygalacturonase, family GH28; The polygalacturonases catalyze the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans; The tertiary structures show a stack of parallel beta strands that are coiled into a large helix; Belongs to the family 28 of glycoside hydrolases (GH28); Signal peptide of lipoprotein cleaved between the residues 19 and 20; Localized in the outer membrane; Specificity unclear. | 0.814 |
| kduI1 | CAZ94329.1 | ZOBELLIA_189 | ZOBELLIA_256 | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. | This protein belongs to the family 105 of the glycoside hydrolases. These enzymes are involved in the catabolism of unsaturated oligosaccharides produced by polysaccharide lyases. Asp183 is the putative catalytic residue (identical to Asp143 of the unsaturated rhamnogalacturonyl hydrolase from Bacillus subtilis, Itoh et al., 2006, BBRC 347, 10211029); Specificity unclear. | 0.647 |
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