STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96725.1Carbohydrate esterase, family CE1; Carbohydrate esterases catalyze the de-O or de-N-acetylation of substituted saccharides; Belongs to the family 1 of the carbohydrate esterases (CE1); Signal peptide cleaved between residues 21 and 22; Localized in the periplasmic space; Specificity unclear. (287 aa)    
Predicted Functional Partners:
bnaI
Acetylxylan esterase, family CE6; Acetylxylan esterase catalyzes the deacetylation of xylans and xylo-oligosaccharides. Belongs to the family 6 of the carbohydrate esterases. Features a signal peptide cleaved between residues 20 and 21. Localized in the periplasm; High confidence in function and specificity.
 
      0.898
CAZ96724.1
NAD(P)-dependent dehydrogenase that adoptd a Rossmann fold; Belongs to the GFO/IDH/MOCA family; Contains a twin-arginine translocation signal peptide cleaved between the residues 25 and 26; Localized in the periplasmic space; Specificity unclear.
       0.762
CAZ96726.1
Oxidoreductase NADPH dependent; Belongs to the aldo/keto reductase 2 family; Localized in the cytoplasm; Family membership.
 
     0.670
xylA
Endo-beta-1,4-xylanase, family GH10; Enzyme that endohydrolyzes the beta-1,4-D-xylosidic linkages in xylans; Belongs to the family 10 of glycoside hydrolase (GH10); The signal peptide is cleaved between the residues 17 and 18; This sequence is a lipoporotein putatively localized in the outer membrane; High confidence in function and specificity.
 
   0.631
CAZ96723.1
Conserved hypothetical membrane protein; Protein consisting of a domain of unknown function DUF1080; Contains a putative lipoprotein signal peptide cleaved between the residues 16 and 17; Possibly localized in the outer membrane; Conserved hypothetical protein.
       0.625
xynB-2
Endo-beta-1,4-xylanase, family GH10; Enzyme that Endohydrolyzes the beta-1,4-D-xylosidic linkages in xylans; Belongs to the family 10 of the glycoside hydrolases (GH10); This protein is a lipoprotein with a signal peptide cleaved between the residues 24 and 25, and probably localized in the outer membrane; High confidence in function and specificity.
 
   0.576
CAZ95127.1
Serine peptidase belonging to the family S12, which includes D-Ala-D-Ala carboxypeptidase B and aminopeptidase DmpB. The active site residues Ser and Lys form the catalytic dyad and are found in the motif Ser-Xaa- Thr-Lys. Localized in the cytoplasm; Specificity unclear.
      0.575
CAZ96815.1
Modular protein containing a N-terminal domain adopting a parallel beta-helix fold and a C-terminal carbohydrate binding module of the family 13 (CBM13). The N-terminal domain is distantly related to the polysaccharide lyases of the family 9 (PL9). Features a signal peptide cleaved between residues 26 and 27. Localized in the periplasm; Specificity unclear.
 
   0.460
CAZ95907.1
Serine peptidase belonging to the family S12, which includes D-Ala-D-Ala carboxypeptidase B and aminopeptidase DmpB. The active site residues Ser and Lys form the catalytic dyad and are found in the motif Ser-Xaa- Thr-Lys. Localized in the cytoplasm; Specificity unclear.
      0.431
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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