STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traATraA is part of a conjugative transposon and is predicted to be involved in its transfer. Belongs to the CobQ/CobB/MinD/ParA nucleotide binding protein family. Localized in the cytoplasm; Function unclear. (194 aa)    
Predicted Functional Partners:
traP
TraP is part of a conjugative transposon ans is predicted as a transfer primase. Contains an N-terminal CHC2 (CycHisCysCys type) zinc finger domain suggesting that this protein binds to substrates as DNA, RNA. Localized in the cytoplasm; Function unclear.
 
  
 0.834
mobB
Mobilization protein MobB; Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation; Localized in the cytoplasm; Family membership.
 
   
 0.812
CAZ96855.1
Hypothetical membrane protein; Contains a transmembrane helix; Localized in the cytoplasmic membrane; Hypothetical protein.
       0.773
CAZ96857.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.773
CAZ96842.1
Integrases are tyrosine recombinases that act by catalyzing the cutting and rejoining of the recombining DNA molecules utilizing a catalytic tyrosine for the strand cleavage. The cleavage of DNA is realized by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue; Contains a C-terminal Phage integrase domain; Belongs to the \phage\ integrase family, Tn4399-type Integrase subfamily; Localized in the cytoplasm; Family membership.
 
   
 0.705
parB
Chromosome-partitioning protein parB; ParB is involved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Binds to the DNA origin of replication. Localized in the cytoplasm; High confidence in function and specificity.
 
 
 0.684
CAZ96853.1
Conserved protein adopting a a ribbon-helix-helix core topology consisting of four helices in an open array of two hairpins. Such domains are found in several bacterial and phage repressors. Localized in the cytoplasm; Family membership.
       0.624
CAZ96859.1
Hypothetical protein; Localized in the cytoplasm.
       0.578
CAZ96860.1
Hypothetical protein; Localized in the cytoplasm.
       0.578
CAZ96861.1
Hypothetical protein; Localized in the cytoplasm.
       0.423
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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