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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94346.1Similar to ASPIC and UnbV protein containing FG-GAP repeats; ASPIC and UnbV sequences are found associated with tetratrico peptide repeat in several paralogous proteins in Rhodopirellula baltica and with FG-GAP repeats in several eukaryotic integrin-like proteins and in several other bacterial proteins. The FG-GAP repeat has been predicted to fold into a beta propeller structure. The FG- GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding; Contains a signal peptide of lipoprotein cleaved between the residues [...] (1187 aa)    
Predicted Functional Partners:
CAZ96246.1
Vanadium-dependent Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles; Lipoprotein signal peptide cleaved between the residues 17 and 18; localized in the outer membrane; Specificity unclear.
 
    0.780
CAZ95318.1
Vanadium-dependent Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles; Lipoprotein signal peptide cleaved between the residues 16 and 17; localized in the outer membrane; Specificity unclear.
 
    0.778
CAZ94345.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Would contain a lipoprotein signal peptide cleaved between the residues 24 and 25; Probably localized in the outer membrane; Family membership.
 
    0.594
CAZ94344.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (30-103) and the Plug module (119-242) acting as a channel gate; The signal peptide is cleaved between the residues 28 and 29; Family membership.
 
     0.565
CAZ96406.1
Vanadium-dependent Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles; Signal peptide cleaved between the residues 21 and 22; localized in the periplasmic space; Specificity unclear.
 
    0.546
CAZ95309.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 22 and 23; Probably localized in the outer membrane; Family membership.
 
 
   0.471
CAZ94347.1
Conserved phosphatase belonging to the Ppx/GppA family, which includes exopolyphosphate phosphatase (Ppx) and guanosine pentaphosphate phosphatase (GppA). Its exact specificity is unclear; Localized in the cytoplasm; Specificity unclear.
       0.445
CAZ95319.1
Conserved hypothetical membrane protein; Contains an uncleavable signal sequence; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
     0.415
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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