STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96991.1Conserved hypothetical membrane protein; Protein that contains a domain of unknown function DUF1573; Putative lipoprotein signal peptide cleaved between the residues 18 and 19; Possibly localized in the outer membrane; Family membership. (156 aa)    
Predicted Functional Partners:
yajC
Preprotein translocase subunit; Part of the secDF-yidC-yajC translocase complex. YajC is also present in a homo-oligomeric complex in excess of the other components. Contains one N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Function unclear.
       0.759
nusB
N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.718
CAZ96927.1
Conserved hypothetical membrane protein; Contains five transmembrane helices; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.590
CAZ95945.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.586
CAZ97054.1
Conserved hypothetical protein; Probably localized in the cytoplasm.
 
     0.548
CAZ94713.1
Conserved hypothetical protein; Protein localized in the cytoplasm.
  
     0.534
CAZ95723.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (23-99) and the Plug module (120-216) acting as a channel gate; The signal peptide is cleaved between the residues 20 and 21; Family membership.
  
     0.529
CAZ96609.1
Protein belonging to the skp family; Skp (OmpH) is a homotrimeric periplasmic chaperone for newly synthesised outer membrane proteins as they emerge in the periplasm from the Sec translocation machinery; Signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Family membership.
  
     0.525
CAZ96289.1
TPR repeats protein; Protein containing six tetratrico peptide repeats (TPR). TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Signal peptide cleaved between the residues 18 and 19; Localized in the periplasmic space; Function unclear.
  
     0.502
CAZ94955.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 18 and 19; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.499
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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