STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ96999.1Conserved hypothetical periplasmic protein; Contains a dimeric alpha-beta barrel domain possibly involved in the stress response; Signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Conserved hypothetical protein. (139 aa)    
Predicted Functional Partners:
ccrA
Metallo-beta-lactamase; CcrA hydrolyzes carbapenem and cephamycin compounds; Binds 2 zinc ions as cofactors; Belongs to the class B of the beta-lactamases family; Contains a putative lipoprotein signal peptide cleaved between the residues 18 and 19; Possibly localized in the outer membrane; High confidence in function and specificity.
 
 
    0.671
rhtB
RthB conducts the efflux of homoserine and homoserine lactone. Features six transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
       0.485
fbaB
Fructose-bisphosphate aldolase, class 1; Fructose-bisphosphate aldolase catalyzes the fourth step of the glycolysis (Embden-Meyerhof pathway). It cleaves the hexose D-fructose 1,6-bisphosphate into two trioses sugars: the dihydroxyacetone phosphate (ketone) and the D-glyceraldehyde 3-phosphate (aldehyde); Belongs to the DeoC/LacD aldolase family (Common phosphate binding- site TIM barrel superfamily); Localized in the cytoplasm; High confidence in function and specificity.
  
  
 0.440
CAZ97303.1
Cytochrome c-containing lipoprotein; Large conserved protein containing a C-terminal cytochrome C. Cytochromes c typically function in electron transfer, but c-type cytochrome centers are also found in the active sites of many enzymes; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Conserved hypothetical protein.
  
     0.420
CAZ95921.1
Conserved protein belonging to the DUF1460 family. Features a signal peptide cleaved between the residues 19 and 20. Localized in the periplasm; Family membership.
  
     0.407
CAZ94618.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Conserved hypothetical protein.
  
    0.405
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.