STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97048.1Conserved hypothetical protein; Localized in the cytoplasm. (291 aa)    
Predicted Functional Partners:
CAZ97047.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.721
CAZ97046.1
YrdC family protein; Conserved protein belonging to the YrdC family. The YrdC protein from E. coli forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands. YrdC was shown to binds double-stranded RNA. Its exact function is unclear. Localized in the cytoplasm; Function unclear; Belongs to the SUA5 family.
       0.714
CAZ97049.1
Glycosyltransferase, family GT2; Putatively involved in the exopolysaccharide biosynthesis; Belongs to the family 2 of glycosyl transferase (GT2); Localized in the cytoplasm; Family membership.
       0.576
lpsL
UDP-glucuronate 4-epimerase converts the UDP-glucuronate to UDP-D-galacturonate. LpsL is involved in lipopolysaccharide biosynthesis; Belongs to the NAD dependent epimerase/dehydratase family, Rossmann fold Superfamily; Localized in the cytoplasmic membrane; High confidence in function and specificity.
 
    0.574
cca
Multifunctional CCA protein; CcA catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows highest phosphatase activity in the presence of Ni(2+) and hydrolyzes pyrophosphate, canonical 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi. Displays a metal-independent phosphodiesterase activity toward 2',3'-cAMP, 2',3'-cGMP, and 2' [...]
       0.546
CAZ95174.1
Conserved hypothetical protein; Localized in the cytoplasm.
 
     0.517
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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