Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| hslR | rplM | ZOBELLIA_3015 | ZOBELLIA_2347 | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.880 |
| hslR | rplN | ZOBELLIA_3015 | ZOBELLIA_2520 | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.881 |
| hslR | rplQ | ZOBELLIA_3015 | ZOBELLIA_2536 | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | Ribosomal protein L17 is one of the proteins from the 50S ribosomal subunit; Belongs to a ribosomal proteins L17b/YmL8 (yeast) family; Localized in the cytoplasm; High confidence in function and specificity. | 0.899 |
| hslR | rplS | ZOBELLIA_3015 | ZOBELLIA_13 | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.915 |
| hslR | rplT | ZOBELLIA_3015 | ZOBELLIA_3036 | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.881 |
| hslR | rplU | ZOBELLIA_3015 | ZOBELLIA_1359 | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.880 |
| hslR | rplV | ZOBELLIA_3015 | ZOBELLIA_2515 | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.880 |
| hslR | rpmA | ZOBELLIA_3015 | ZOBELLIA_1358 | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | Ribosomal protein L27 is part of the large ribosomal subunit (50S). It cross-links to the 23S rRNA and to the A and P site tRNAs. RpmA is essential for ribosome function, but its exact role is unclear; Belongs to the ribosomal protein L27p family; Localized in the cytoplasm; High confidence in function and specificity. | 0.880 |
| hslR | rpmB | ZOBELLIA_3015 | ZOBELLIA_595 | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | Ribosomal protein L28 is a part of the large subunit (50S) of the ribosome; RpmB interacts with the proteins RplQ (L17) and RpmF (L32); Belongs to the ribosomal protein L28p family; Localized in the cytoplasm; High confidence in function and specificity. | 0.906 |
| hslR | rpmI | ZOBELLIA_3015 | ZOBELLIA_3037 | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | L35 is a basic protein from the large subunit (50S) of the ribosome; Like many basic polypeptides, L35 completely inhibits ornithine decarboxylase when present unbound in the cell, but the inhibitory function is abolished upon its incorporation into ribosomes; Belongs to the ribosomal protein L35p family; Localized in the cytoplasm; High confidence in function and specificity. | 0.893 |
| rplM | hslR | ZOBELLIA_2347 | ZOBELLIA_3015 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Heat shock protein 15; HSP15 is involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome; Induced by heat shock; Contains a S4 RNA-binding domain; Belongs to the HSP15 family; Localized in the cytoplasm; High confidence in function and specificity. | 0.880 |
| rplM | rplN | ZOBELLIA_2347 | ZOBELLIA_2520 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.996 |
| rplM | rplQ | ZOBELLIA_2347 | ZOBELLIA_2536 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L17 is one of the proteins from the 50S ribosomal subunit; Belongs to a ribosomal proteins L17b/YmL8 (yeast) family; Localized in the cytoplasm; High confidence in function and specificity. | 0.994 |
| rplM | rplS | ZOBELLIA_2347 | ZOBELLIA_13 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.988 |
| rplM | rplT | ZOBELLIA_2347 | ZOBELLIA_3036 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.994 |
| rplM | rplU | ZOBELLIA_2347 | ZOBELLIA_1359 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.994 |
| rplM | rplV | ZOBELLIA_2347 | ZOBELLIA_2515 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.994 |
| rplM | rpmA | ZOBELLIA_2347 | ZOBELLIA_1358 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L27 is part of the large ribosomal subunit (50S). It cross-links to the 23S rRNA and to the A and P site tRNAs. RpmA is essential for ribosome function, but its exact role is unclear; Belongs to the ribosomal protein L27p family; Localized in the cytoplasm; High confidence in function and specificity. | 0.992 |
| rplM | rpmB | ZOBELLIA_2347 | ZOBELLIA_595 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L28 is a part of the large subunit (50S) of the ribosome; RpmB interacts with the proteins RplQ (L17) and RpmF (L32); Belongs to the ribosomal protein L28p family; Localized in the cytoplasm; High confidence in function and specificity. | 0.986 |
| rplM | rpmI | ZOBELLIA_2347 | ZOBELLIA_3037 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | L35 is a basic protein from the large subunit (50S) of the ribosome; Like many basic polypeptides, L35 completely inhibits ornithine decarboxylase when present unbound in the cell, but the inhibitory function is abolished upon its incorporation into ribosomes; Belongs to the ribosomal protein L35p family; Localized in the cytoplasm; High confidence in function and specificity. | 0.986 |
page 1 of 6