STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97239.1Putative protein. (68 aa)    
Predicted Functional Partners:
traM
TraM is part of a conjugative transposon and is predicted to be involved in its transfer; Contains a N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Function unclear.
       0.773
traG
TraG is part of the conjugative transposon and likely involved in its transfer; Localized in the cytoplasm; Function unclear.
       0.773
traN
TraN is part of the conjugative transposon and likely involved in its transfer; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Function unclear.
       0.768
CAZ97238.1
Peptidase family M23 mainly contains endopeptidases that hydrolyze bacterial cell wall peptidoglycans. One catalytic zinc ion is bound per peptidase molecule. The cation ligands occur in the conserved motifs HXXXD and HXH. The first histidine of the second motif is also involved in the catalysis; Contains a signal peptide cleaved between the residues 23 and 24; Localized in the periplasmic space; Specificity unclear.
       0.686
CAZ97243.1
Hypothetical protein; Localized in the cytoplasm.
       0.515
CAZ97244.1
Hypothetical protein; Localized in the cytoplasm.
       0.454
CAZ97245.1
Hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 18 and 19; Localized in the periplasmic space; Hypothetical protein.
       0.454
mobC
Putative mobilization protein MobC; MobC is part of the conjugative transposon CTn341, first identified in Bacteroides strains. It is involved in the transfer and mobilization of CTn341; Belongs to the TraG/TraD family; Contain a P-loop and walker-B site for nucleotide binding and five transmembrane helices; Localized in the cytoplasmic membrane; Function unclear.
       0.439
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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