STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94385.1SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 18 and 19; Localized in the outer membrane; Hypothetical protein. (550 aa)    
Predicted Functional Partners:
CAZ94386.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (85-159), and a Plug module (175-281) acting as the channel gate; The signal peptide is cleaved between the residue 32 and 33; Family membership.
 
 
   0.958
CAZ97745.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (22-95) and the Plug module (111-220) acting as a channel gate; The signal peptide is cleaved between the residues 20 and 21; Family membership.
  
 
   0.824
CAZ97719.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (58-131) and the Plug module (147-263) acting as a channel gate; The signal peptide is cleaved between the residues 38 and 39; Family membership.
  
 
   0.803
CAZ96375.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules (here, possibly suphated sugars) that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (31-106) and the Plug module (122-225) acting as a channel gate; The signal peptide is cleaved between the residues 29 and 30; Family membership.
  
 
   0.787
CAZ94426.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (24-97) and the Plug module (113-222) acting as a channel gate; The signal peptide is cleaved between the residues 21 and 22; Family membership.
  
 
   0.787
CAZ98083.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules (here, Possibly sugars) that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (120-190), and a Plug module (210-315) acting as the channel gate; The signal peptide is cleaved between the residue 28 and 29; Family membership.
  
 
   0.785
CAZ94424.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (31-94) and the Plug module (123-217) acting as a channel gate; The signal peptide is cleaved between the residues 24 and 25; Family membership.
 
     0.777
CAZ96162.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (33-106) and the Plug module (122-228) acting as a channel gate; The signal peptide is cleaved between the residues 31 and 32; Family membership.
  
     0.774
CAZ94430.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension that probably interacts with an anti-sigma factor (Secretin/TonB (STN) domain), would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (146-220) and a Plug module (236-371) acting as the channel gate; The signal peptide is cleaved between the residue 27 and 28; Family membership.
  
 
   0.774
CAZ98031.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules (here possibly sugars) that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (26-98) and the Plug module (114-224) acting as a channel gate; The signal peptide is cleaved between the residues 24 and 25; Family membership.
  
     0.774
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.